BtaINT0165240 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008349 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr23:29861448-29862004:+
Coord C1 exon
chr23:29861448-29861559
Coord A exon
chr23:29861560-29861877
Coord C2 exon
chr23:29861878-29862004
Length
318 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
GCAGGAACATGTTGTTTCAGGAG
3' ss Score
2.54
Exon sequences
Seq C1 exon
GCTTATTTCCCTTCTCTCAGCTCTACCATTTCCTCAGTGCCCTGCCTTAGCCAGAGATGGAAGCCAAGGAAACCTGCCAGGAGCAAAACATACAGTGATGAGCCAGCCTCAA
Seq A exon
GTGAGCTAAGGCCCCTTCCTTCCTTCCTGAAAATATATCACTGTCTCCTAAATGTGGCCTTGTCCTCACTCCCAAGTCCAGGTGCTCCCTCTCATAAGGGGTGCTTTTTTGGATGACAGACCATTTGTGGATTGTTTGTTTGTTATTTTTTGCTACTGAAAGCCTATGCTCCTTTTCACCTCGTCCCCAGATAAACACCGAACAGTAACAGCCTTTCACTTCTGTAAACCTTCTCCCTACAAATTCTTTTCTTCTGCCTCTGTTTCCTGAGGGAACTATGAAATTTCCTCCCACAAAAGCAGGAACATGTTGTTTCAG
Seq C2 exon
GAGTCAGTGACATTTGAGGATGTAGCTGTGAACTTCAGTCATGAGGAGTGGCAGTGTCTGACCCACGCTCAAAGACACCTCTATAAAGATGTGATGTTGGAAAATTATGGGAACATGGTGTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008349:ENSBTAT00000034329:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTATTTCCCTTCTCTCAGCTCT
R:
CAAGTGACACCATGTTCCCAT
Band lengths:
239-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]