BtaINT0165246 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003953 | ZNF316
Description
zinc finger protein 316 [Source:HGNC Symbol;Acc:HGNC:13843]
Coordinates
chr25:39007485-39008878:+
Coord C1 exon
chr25:39007485-39007603
Coord A exon
chr25:39007604-39008751
Coord C2 exon
chr25:39008752-39008878
Length
1148 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGGGTGCTTTGTTTCCTAGGGG
3' ss Score
7.24
Exon sequences
Seq C1 exon
CCCTGCAGGCCTTCCGGGCTCCAGCCACGCCGAGGGATGAGGACCTGGAGCGGGAGGGGGAGGGGGACGAAGAGGAGGAGGACGAGGACGAGGTCGACTCCCTGACGTCTGGGTCTCAG
Seq A exon
GTGAGCTGCCCCCTGGTTTGGAGCTCAGTTAACCAGGCAGGGGTTCCGGGGCAGAGGGAGGGGGCGGGATCCGCACCTCCTGTTGCGGAAACCCCCTGCTGGCAGGGCAGCGGCTCTGTGGGTCCCAGGCCAGCCCCAGCTGTGAGCGGGGTCAGGGCTGCGGGAAGCAGTTGGCCGTCTCTCTGAGTGACTTCACTTTCACTTTTCACTTTCATGCACTGGAGAAGGAAATGGCAACCCACTCCAGTGTTTTTGTCTGGAGAATCCCAGGGATGGTGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTCGGACACGGCTGAAGCGACTCAGTAGTAGTACTAGTAGTAGTCTGAAGCCCAGGAGTTATGGTTCTGCTGTCCTGGGCCTGACGCTTCCCAGGCCACTGTCCTGAGTGGGCAGCAGTGCCCAGGGGTTATGGTTCTGCTGTCCTGGCCTGACGCTTCCCAGGCCACTGTCCTGAGTGGGCAGCAGTGCCCAGGGGTTATGGTTCTGCTGTCCTGGCCTGACGCTTCCCAGGCCACTGTCCTGAGTGGGCAGCAGTGCCCAGGGGTTATGGTTCTGCTGTCCTGGCCTGACGCTTCCCAGGCCACTGTCCTGAGTGGGCAGCAGTGCCCAGGGGTTATAGTTCTGCTGTCCCGGCCTGATGCTTCCCAGGCCACTGTCCTGAGTGGGCAGCAGTGCCCACACTGCTGGTGCCAGTTGCCCACCCCGGCGTGAGCTCTCACACCGCTGGTGTGACCCCTGGCTTGAGGCAGACAGTGATGCGGGAGGGGTGAGGTGGCCATGCAGCATAGCTGAGGGGTCCTGGTCGTCGTGGTCCTGGGACTTGGGCATGAGACCCCGTGCTGCCCCACCTGAGCTGAGCGATCTCCTCTCTGAGCCTGAGGTCCTGATTGCTGAATGAGACTGGCCTGGGTGAGGCCTGGGAGCCCCTAGTTCCGCCAGGCGTCTGTAGGCTTGCCAGTGATGGGGTGCTGGGCTGTGTCCCCGTGAGCCCCACATTGAAGGGCGAGCCCAGTTCCCGCCAAAGTGATCTCCTGTCCTGTCTTCATGGGGGTGCGCCCCTGCCTCTCACCCAGCTCAGGGAAGGGCAGTGGCCAGGGTGCTTTGTTTCCTAG
Seq C2 exon
GGGCTGGTGACCTTTGAAGACGTGGCTGTGTACTTCTCCCTGGAGGAGTGGGAAAGGCTGGACGCAGAGCAGCGGGAGCTCTACAAGGAGGTCATGCGGGAAAACTATGGGATCCTGGTGTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003953:ENSBTAT00000005167:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGCCGAGGGATGAGG
R:
CCAAGGACACCAGGATCCCAT
Band lengths:
222-1370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]