BtaINT0165300 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005882 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr7:12168523-12173412:-
Coord C1 exon
chr7:12173325-12173412
Coord A exon
chr7:12168612-12173324
Coord C2 exon
chr7:12168523-12168611
Length
4713 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCTCTCCTATTCTCCTGCAGCTC
3' ss Score
10.92
Exon sequences
Seq C1 exon
GGGCTGAAGGTGGCTGTGCAGATGCAGAGGGTGGCCACGCCGGAGCCTGCGCTGGGCCTCCCCAGACTGTGGAGGGCTGGGGGTGCTG
Seq A exon
GTGAGTAAGAGCCTGGTGGAATTACAGCCCGAGGGCCCTCCTGTGTTGTGTTCTGTTGTGTCTGGGAACTTGGATCCACCTTCCTTTCTTCTGACTGCAGTCGTTGTCTTAGGGAGAGAATATATAAAGTCATCTTATTTTTTATGGGCTCCCCAGGTGGCACTTGTGGTAAAGAACCTGCCTGCTAATGCAGGAGACAAAAGAGATGTGGGTTTGATCCCTGGATTGGGAAGATCCCCTGGAGGAGGGCATGACAACCCACTCCAGTATTCTAGCCTAGAGTATCCCATGGACAGAGGAGCCTGGCATGCCACAGGCTGTGGAGTTGCAAAAGTTGGACACGTCTGGAAATGTAGCACAAACAGTGTTCCATCGTACATATGTCTTCTTTATCCGTTTCTCTCTCAATGGACATTTAGGTTGGTTCGGTATCCTGGCTATTGTAAATAAGTGCTGCAGTGAACGTTGGAGTGCATGTATCTTTTTGAATTATGATTTTCTCCATGTATATGTCCAGGAGAGGGATTGCTGAGCCATATGGTAGTTCTATTTTTAGTTTCTTAAGGCACCTCCATACTGTTCTCCATAGTGACTGTATCAATTTGCGTTCCCACCAACAGTGAAGGAGGGTCCCCTTTTCTCCACACCCTGTCCAGCATTTATTGTTTGTAGATTTTTTGATGATGGCCATTCTGACAGGTACAAGGTGATAACTTCACTGTAGTTTTGATCTGCATGTCTCTAATGACCAGCGATGCTGAGCATCTTTTTACGTGCTTTTTGGCCATCTGTGCTATAAAGTACTCGTGGAGTACTTGGAGTACTCTTTGCTCTTAAATTACCCTGGAAGGGCTCTAGACTGTCATCCTGTGGTGAGAAGGACACTGGGAAGCAATTGCAGACAAACCCCTGACACCTTCCCCCTGGGGCCTTGCAGTCTGGGGAGTGAGTATGGGGTAGGCGTGTCAGGGGTCCCTAAGGCCACGCCCCAAACTCAGCTTACAGTTGTACTCATGGCTCTGATTTAGTCCAGTGAAGGAATGCAAAGCAAAACCAGCAAAGGGAAAAGGCTTTTGGGGTGATGCCTGGAGGAACCCAGGCACAAGCTTTCGGAGTCCTCTCCCAGTGGAGTCACACAGGACACGCTTAATTCCTTCAGCAGCAAGTTGTGACAACACGTGCACAGTGAAATTTACACCGAGGTTCATTATAGACTCAGAGCCCAGGGTTTTCCCTGGGGGCTGGTCATGTAGGCACCATCTGCCCAGCACATATCTAAACTCCAGGCTTCTGGAAAGAAAGCAGGCATCCAACATGGACTGCGTTATTTGTACAGACAGTTTAAGCAGAGTGAGCCCCTCTTATCAGTTAGGGTCAGGGGAACTGTCTCGAAATCCAAGTTCTGGGACTTCCCTGGTGGTCCAGTGGTTAAGACCCCATGCTTCCAATGTAGGGGGCATGGGTTCGATCCCTGGTTGGGGAACTAAGATCCCACATGCTGTGCGGCCAGCTAAGGGCCAGCCTTGCCAGCTGGCTTTGCTAAGGAGAGCAGTCAGGAGGGCTATGTTAACTTTTGTCTGCACAGTAGGGAAGCATGGAACTATGTAAAATGTATTCAGGAGGTCAAGTTGAGATAGTTTGGTGGGTTATGTATACATTCATTTACCAATTTGGGGCACTTATGGGAGGGGAACTGGGGGCTTCCCTGGTGGCTCAGCATTAAAGAACCCACCTGCCAATGCAGGAGAAGCATGCTGGCATCCCTATGGGACACCAGCAAGTGATGGGGCAGGAACTTGAACAGGAGTGGAGTAGGAGGCTGGGAGTTAGGTGCCGAAGCCTGGCAAAGTGGAAGTGTTTAGTTACTCATTCAGGTCCGACTCTTTGTGACCCCAGGGACTGTAGCCTGCCAGGCTCTGTACATGGGATTTTTCAGGCAAGAATACTAGAGTGGGTTGCCATTTTCTTCTCCAGGGAGATCTTCCTGACTCAGGTCTCCCCCATTGCAGGCATATTCTTTACCAATTGAGCCACCAGGGAAGCCCTCCGAAGCCCGGGGTGGTGGGTTTTAAGATAGAGGGATTGGATGACTGAACATTTCTACTAGATCCTCCCTGTAGATGGAGGTCACAGGGGACCCTAGTGAGGTGCTGGTTGTTGAATGGTAGTGTTTTGGAACTGAATACAAGGTGAGGGAATGAGTACAAAGATTGCCCATGATGGGGAACAAAGAGATAAAACAGTAGCCAGAGGGAAAGGTGGAGTATTAGAGCTGTATTGTGGGCCCCCCTCCCACCAGACTATATTGAAGTTCTAACCCTTGTTACCTGTGAACGTGACCTTGTTTGGAAATAGGGTCTTTGCAGATGACATCAGGTTAAGATGAGGTCGTGACCCTAATCCCATATGAATTGTGCCATTTTAAGAAGGGGAAGATGCCTTGTGAAAACAGAGACACGTGGGGGAGAAGGTCACATGATAACAGAGGCAGTGATTTGAGGGACACAGTTATAAGCCCAGGATTGACCTTCACTACCAGAAGCCAAAGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACCATAAAGAAAGTTGAGTGCCAAAGAATTGATGCTTTTGAATTGTGGTGCTGGAGGAGACTCTTGAGAGTCCCTTCAACTGCACGGAGATCAAACCAGTCAACCCTAAAGGAAATCAGTCCTGAATATTCACTGGAAGGACTGATGCTGAAGCTGTTGCTCCAATACTTTGGCCACCTGATGCAAAGAGCTGACTCACTGGAAAAGACCCTGATGCCGGGAACGATTGAGAGCAGGAGGAGAAGGGGATGACAGAAGATGAGATGGTTGGATGGCATCACCAACTCAATGGACATGAGTCTGAGCAAACTCCGGGAGGTAGTGAAGGACAGGGGAACTTGGTATGCTGCAGTCCATGGGGTTGCAAAGAGTCAGATACGACTTAAGGATAACGACAACAACCTTAAGCCAAGAAAAGGCAAGGAATGACTCAGCCGGAGTTTCAGAGGGAGTTTGGCCCTGCTGACGGCTCGATCCTGGACTTCTGGCTGCCAGAACCCTGAGAGAATACAATTCTGTTGTTCTAAGCCACCCAGTTGTGGTATTATTATTATTTTTTTAATAGCTGCCCTGGGAAACTGATAACATGGGATCAGGATTGGACATGGTTCAGATTTAATGACTGAGGGAAAAGTCCCACTGAGAGAGGAGGTGGGGGTATAGGGAGATGGGATGGCGGGCATCACTTCTCCTCTGTGGCAGGCCAGAGTGAGGAGCCTGGTGTGGGGGAGGAATGTTATCGATCTGAAGACAGGAAGGGAAGGACACTTCCTTCTCAGGCAGGCTCCCAGGGAAGTGGTGGTTTCTCTGTGCTCGGCTTGTGGTAAGTCCTGGGCGGTACCAACCCTGCAGAGTCAGGACAGAGGAAGGGGCCCTGCAGTCAGGGAGGAACGGCTGACCCAGGGCTGAGTCAAGGGGGAGAAAGGAGCGCTTTAGAAACTTCAGAGTCTGTTGGTGAATCGAGACTGTGGCTTCAGAAATTTGGAATGGAGGAAATGTGTGTGTGTTTCTTTTCTTTTTTTTAAAGTACTCGTTAACGTTAAAAACGTTTTAGTTTTTATTGGGGTATAGACAGTTAATGATGTTGTGATAGTTTCAGGTGAACAGTGAAGCTGAGTCATATACATATAGGACTCAGCCATACGTATACATGTATCTATTCTCCCCCAAACTCCCCTCCCATCTGGGCTGCCACATAACATTGAACAGAGTTCCATGCGGGAGCATTTGATGACATTTAATGAATTTCCCACCATGTGGCTTCAAGCTGGTGTGGTGGTGTTCAGTTGCTAAGTCATGTCCAACCCCTTTTGACCTTATGGACTGTAGCCCGCCAGGCTCCTCTGTCCCTGGGATTTCCCAGGCAAGAATACTAAAGTGAGTTGCCATTTCCTTCTCTGCAAGCCCCTCCCACACCCATAGTCTTCTTCTCAGCTCTTCTGCTGTAGAATTTGGCCTTCATGATGACAGGCTGCTTTGGGAGTTTTTTTTCCCCCAGATCTTTCTGATCACACCACATCAGTGATAGGGACAGCTTCAGTCTTGTTCTCAACAGTACTTATCTGGATCTTCTCACCGACCAAGGTTAACAGTTTATCAAGTTTGACAGTTGGACAGAGGCTCTAGTTCCTCTTTAAGTGGTAATGCCTTGTACCGACTTTCCCAAAGTCTCCTGCATGATATTCATCCAAGTCGATCCTGTGGTGAAGCAGGCCACCAGTGTTAGCTCAGCTTCCTGGGTGTTTCCCATGATGCGGGCGTGGCTCATGTGGCCCCTAAGTTTTCGGGTCTTCCTTAGTCTGGATGGCATATTGGTGTCTGAGATGAAAGAGCTGTGTGTGTTTCTGTATATTTCTGTGTGTTTGTATGTGTGCTTGTGTATGTGTGGTGCGTCTCTGTGTATGTGTCTCTGCACGTAGTGTATGCATGTGTGTGTACTGGTGTGGGTGAGTGTGCCCACGTGCCCAAGTAGCTGTGGGTGTTTGCAAGCGTATGTGCATGCTTGTCTCAGTGTACAGTACGTGTGTGTGTTTGTCCAAGGGAGTGTGTGCACCTGTGGTCACTCACAGTCAAGGTGGGCAGCCTCAGCCCTGCTGCTGAGACCCTCATGGCTCTCCTATTCTCCTGCAG
Seq C2 exon
CTCTGTCCGCTCAAGGCCCTGCCTGGCTCCAGAAGGGGAGCATAGAAGAAGAAGCCATGACTCCTGGGGGACTGACCACCTATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005882:ENSBTAT00000007733:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]