BtaINT0165347 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008902 | ZNF345
Description
Bos taurus zinc finger protein 345 (ZNF345), mRNA. [Source:RefSeq mRNA;Acc:NM_001035327]
Coordinates
chr18:47834232-47835842:-
Coord C1 exon
chr18:47835716-47835842
Coord A exon
chr18:47834312-47835715
Coord C2 exon
chr18:47834232-47834311
Length
1404 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTCTATTGTTTTTTTTCAAGGAG
3' ss Score
7.67
Exon sequences
Seq C1 exon
GATTTGGTGATGTTCAGAGATGTGACTGTGGACTTTTCTCAGGAAGAGTGGGAATGCCTGAACTCAAATCAGAGGAATTTATACAGAGATGTGATATTAGAGAATTATAGCAACTTGGTGTCACTGG
Seq A exon
GTAAGTTTCAGTTCAGTTCAGTAGCTCAGTCGTGTCCGACTCTTTGCGACTCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAAACTCACGTCCATCGAGTCGGTGATGCCATCCAGCCATCTGTGTCAAATAATGTAGAAATTCACATGACTGAATTTCAGGGCTGGCTGTCTAAAAACTAGTCAACTATCTGCTTTGTAGTTTGAGAATAGGTGTCTTCAGCTGTTAAACTATTAAATAGCACTGTTAGCTTCCCCCATAAATCATTGACCTTTACATTTTCCTTTGCCTTTTCTATTATATAATTGCTTCTCTTTAATGACAGTTGGATATAAATTCTTAGACACTCAGAGCAAAACCATTTTCAAAGAAGTCTGTTTTCATATTGTTGTAGATGGTCTATTATCTATTAACTTATCTGCAGTGTGAGTAGGAAGACAGAGGTGTCTGGCTGTACATACCTATTGAAAAAGTTGACACAGTGTATATGATACTGGGTTAAATCAATAGTGTGTTGAAATTCAAGTGGACACATTCAATTTACTACAACAAACATACTATCTTTTTAATTTATTTAAACATTAACTTTTATGATTAATAGTTTAAAATATATGAACTTTGTATTTGACATTGGATGAATATATTGGCAAGAAACAAATTGTTTTCCTCCTAGCAAAATATTTAAATAAAAGCAAAAATAGTACCTAATGAACATGTATAGTGCTTAGTATGTACTAGGCACTCATCTAGGCACTTAAGTGACACCTCACAAAAATCTTATGGGTATACATTGCTGCCGCTGCTAAGTCACTTCAGTTGTGTGTGTGTGTGTGACCCCATAGACAACAGCCCACCAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGCATGCATGCTAAGTTGCTTCAGTCGTGTCTGACTGTGTGCGACCCTATGGACAGCAGCCCACTAGGCTCCTCTGTCCACAGGATTCTCTAGGCAATACTGGAATGGGTTGCCATTTCCTTCTCCAGGGTATACGTTATTATTTTATATATTTTAATATATTATTATTTACTTATGAGTATATATTATTACTTTTCCAACTGAAAAAACTGAGCCTGTAAGTGACTCAGGTGAGAGAGGCAGGATTTGAAGCTAGTGCTCTCAATGATTACTTTTAGAGACCAAGCCTGTATCAATTGGCAATTATAATAAGACAACATTCCTACCTCTCTGTTCTTGTGATCCTCAAGTAACTCTAATATGAATGTTTTTCAGTCCAATTACTCTTCTTTGTTCTGAAGCCTTGGTGAATTTTATACTTTCTTTATAATGTTCTATTGTTTTTTTTCAAG
Seq C2 exon
GAGGATGTTCCATTTCTAAGCCAGATGTAATTACTCTGTTAGAGCAAGGGAAAGAACCCTGGATGGTTGTGAGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008902:ENSBTAT00000006317:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGTGATGTTCAGAGATGTGACT
R:
CTCATCCCTCACAACCATCCA
Band lengths:
206-1610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development