BtaINT0165420 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009152 | ZNF391
Description
Bos taurus zinc finger protein 391 (ZNF391), mRNA. [Source:RefSeq mRNA;Acc:NM_001100352]
Coordinates
chr23:30996976-31003179:-
Coord C1 exon
chr23:31002915-31003179
Coord A exon
chr23:30997084-31002914
Coord C2 exon
chr23:30996976-30997083
Length
5831 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
AAATCACTTCTCATCAGCAGAAT
3' ss Score
3.43
Exon sequences
Seq C1 exon
AGCGTCTCTGTCCTCTAACAGATCATCTGCTCCAGGAGAACTAGGGCTGGGCGGTTAATCAGGCAATGACTGGCTCTCCGTACTGAGCAGCACACGAGTCTGAGTGGAAGAGTGTCAGTGACCTCAGGAAACTTGGTGAAACCCAGAGTTCGACTCAAGGGTTTCTCATTAATCCTTCCGGCTTCCTCTAGCTCCGCGCACTCAGGTTCCGTCCAAGCCAGGGTCCGGGCCAGGGTGTGTCCCGGCGCTCGGCCAGAGACGGCCG
Seq A exon
GTGAGTGGGGCACGCAGGGTCCTGGGTCCTGGACGGGTGGGCCTGGAGATTCTGAAGTGGTCGTGCCGAAACAGGTCTCGCGGGGAATACCAGCGAGTGGCCTGGGGGTGGCCTGTCCGCAGATCCGGCCGAGAGGTGCCTCCGCTGTTGGAACTCGGCACGGTATCTCGCCTCCCGGGTGGGCACAGCCTAGTCCTTCGGCTGCAGTGACAGTGGGTGATGCTCTCCGGGTGAGCCTCTGGGAGATGGAAATGATCAGAGTTGCGTTCTGCTCCGTTCTAGCTGGGCGAGCAAGGGCTTCTGTGTTGGGGGTGTTTCCCAGATGTTTAGCGGGTGCTAGGCACTAAGAGTTTTTAGCAGAATTAACTCATTTAATCCTCGCTTTAACCCCATGAGATGTACTATATTATCCTCATTTACAGATAAGAAAATCGAGGCACATAGAGACTAAGTACCTTACTTGAAATTACCGAACTTGAGAGCAGTAGTATTTTTCAGTGATTCTGATGATGAGGGTTGATGCTTGAACACAGCAGGTGTTATTTGTTAGAGGTACTGACAAATTCTGTATATCAAATTCTGTGAATCTGTTGTGACTTTGAGCCAATCTTTATGGAGACTGTTGTCTGAAGAGCATCTTGTGATAGGCCTGGAGACTTGACCATCTCTGTTCTACTAGAGTTGAATGGAGGCTGCTGAGGCTAACTCTGGTGCATTGGCAAAGGCTCCGGGAAATAGTCAGTCTGGTACCAGAAAGCAAAGCACCAGGAGAAGAGCTATTCAATTTTTTTTTTTTTTAATGTAGAAATTTTCTTCAGTGCGGTTTCTATGTGTCTGTCGTAGGTGTCACATACACAAACAATATATAATAACAGTTACACATGTCAGGAGCTTATTTGCAATGCCAAAACAACTATTGGGGGAGGGGCAGGGAGGCTCTTGTACTGCACACCATATACACATTAGTTAAATTAGAGATAATCTTATATCAAACTGGCATATTTTACCAGTATTAATAAGCATGAGAGTAAACCCTCAAAATTGGCTCTCTCCTTTGAACTCTGTTCTAGTTCTTTCTCTGTTCAGGACATTCTGCCTATTTTTAGATATTCTATGTTTTAAGAGTTCCAGTGAGTCAGTTTATAACTGTCTTCAAATTTCAGATCTTCCTGGTTTCCCTTTGTCTCCAAAACCCTGAACATTTTATCAAAAATAATCCTTCTCCAAGGTGGACTGTAACATGTAAAAATATAATAATATCCCACTATATACAAAATTCCCATTGTACCTATGTCACCTATATGGAGTGTGAATGTTCTCAGATCTTCAAGGACTTCTGTTGGGGATGAGGACTTTGCTTTAGAGGATTTAGAGGCTTTGCATTTTACCACCTGAGAGATTCACTATTTATCAATTGTGTAACTGTTAATACTTTAGTTCCATTGCACTGGAGAAGTAATTCTCTACCTATATGACCTACCGTCCCTTGTACTATCTCGAAATAAAATTCATAGGTAATATTAACTACCTACAGATATAATATCACTATATTACCTTAATTGTAATAAAAGGAGAAAAAAGGAAAGTAATTTAGAATAATATGTATTTCAGCATGTAAATGATTGGATAAAACAGACTATTGTACTTATACATAGAATCACTGTGAATGCAACAGCTATGAATGCAGGCTGATATTTGAATATTGTAGTTAGGAATCTAATACCATAAGTGTTTTGATATTCCTCAAATGGTGAACAATTCCTAGTATCATTCAAAGAGAAAGAAGTATTTCCTTGATTTTGCACGACACAGCAAATTTCTACAAAATACTTTGTATTTACATGAAAAGTAGTGGTGCATTCCAGCCTCACGTAACCATTAACAAATTTTTTTTAAGTCTAGCAGGATAAAGAACATTCTTTGTTTTTGCAGAAATAGCCATCATCATTCAGTTCAGTTCACTTCAGTAGCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAGACTCTCGTCCATCAAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCCTGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACACTTCAAAAGCATCAATTCTTCGGCCCTCAGCTTTCTTCACAGTCCAACTTTCACATCCATACATGACCACTGGAGAAATCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGTGTCTTTTAATTTCATGGCTGCAGTCACAATCTGCAGTGATTTTGGAGCCCCAAAAAATAGTTTCTCACTGTTTCCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTCCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTGAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCTAGCTTGTGCTTCTTCCAGTCCAGAATTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACATACTCCTTTTCCTGTTTGGAACCAGTTTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGGTTTCTCAAGAGGCAGGTCAAGTAGTCTGGTATTCCCATCTCTTTCAGAATTTTCCAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTCCTTTTTCCATGAACAGCAAATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTGAACATCAGGAAGTTCATGGTTCATGTATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGTGTGTGAGATGAGTACAATTGTGAGGTAGTTTGAGCATTCTTTGGCGTTGCCTTTCTTTGGTATTAGAATGAAAACTGACCTTTTCCAGTCCTGTGGCTACTGCTGTTTTCCAAATTTGCTCGCATATTGAGTGCCGCACTTTCACAGCATCATCTTTCAGGATTTGGAATAGCTCAACTGGAATTCCATCCCTGCACTAGCTTTGTTAGTAGTGATGCTACCTAAGGCCCACTTGACTTCTCATTCCAGGATGTCAGGCTCTAGGTGAGTGATCACACCATTGTGATTACCTGGGTCATGAAGATCTTTTTTGTACAGTTCTTCTGTATATTCTTGCCACCTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCGAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTGGCCACTGAGGAAAGCTTTCTTATCTCTCCTTGCTATTCTTTGGAACTCTGCATTCAAATGGGTATATCTTTCCTTTTCTCCTTTGCTTCTCACTTCCCTCCTTTTCACAGCTATTTGTAAGGCCTCCCCAGACAGCTGTTTTGCTTTTTTGCATTTCTTTTTCTTGGGGATGGTCTTGATTCCTATCTCCTGTACAAAGTCACGAACCTCCATCCATAGTTCATCAGGCACTCTATCTATCAGATCTAGTCCCTTAAATCTATTTCTCACTTCCACTGTATAATCATAAGGGATTTGATTTAGGTTATACCTGAATGGTCTAGTGTTCTTCCCTACTTTCTTCAATTTCAGTCTGAATTTGCCAATAAGGAGTTCATGATCTGAGCCACAGTCAGCTCCCAGTCTTATTTTTGCTGACTGTATAGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATCAATCTGCTTTCGGTGTTGACCATCTGGTGATGTCTATGTGTAGAGTCTTCTCTTGTGTTGTTGGAAGAAGTTGTTTGCTATGACCAGTGCATTTTCTTGGCAAAACTCTATTAGTCTTTGCCCTGCTTCATTCCATATTCCAAGGCCAAATTTTCCTGTTACCCCAGGTGTTTCTTGACTTCCTACTTTTGCATTCCTGTCCCCTATAATGAAAAGGACATCTTTTGGGGTGTTAGTCCTAAAAGATCTTGTAGGTCTTCATAGAACCATTCAACTTCAGCTTCTTCAGCATTACTGGTTGGGGCATAGACTTGGATTACTGTGATATTGAATGGTTTGCCTTGGAAATGAACAGAGATCATTCTGATTCTAATAACACCATGAAATCAATGTTTCAACCAAAACAAACAAAAACCCTCACAAATTCTCAAAACTGCCAACAGACTAATGGCAGAGTAGCTTAAGGATCTGGGCTGCAAGAATGTAGGCCAGCCAACCTAAGCAGTTAGGCAAATTGCTACTAAGAAATATTAGCACTATAAAGTATGCAACTGGATTTTATTCCAAGGTTCTAAATAAATTAGAAATTCTGACTTATCAATCAACTCAGTGGTAGGGTCTTGCATTCCCTGTTTCCAGCTGAAAGGAACGTTCTTGGCAAAGCTGGACACAGACAGCATCATCATCATTTGCTCTTGAGGTTCTCCATGGATGGCTTCTTGATGAACATCTTCCAAGGTTCACCTTGACATCTGGAAGGTTCCCAGTCTCTGAGAAAGGCAAGACTTATGAAACCAGATATGCTCCTAACCTAGTGGATCTCAAATAGTGCTGTGAGCAGAACCATTAGGGCAACTATTATACGGTTTATTGCCTACTGTCATACCCAAGGGCTCTGGATAAATTTACAAGAGAACGGGTTAAGGAAAAAGCTTCAATGGGGGGAACTCAAGAGTTCGGAGAAGGGCTTTCAGAAGAATAGGCACAGATTCCCATATCTTCCCCATTTTACTGCTAGAGCCAGGATGCTCTGTTAGATATTCAGTGTAGGTCAGTATTCTCAGTGAAGGCCTTGCTGTTCTTCCTTCTTATAAGGAAAATGTAAGAACAACCTTGGGAGTAGGAAGATAAACAGACTGTTTGGTACAGTCTGAATGTGGGGTACCAGCTTTTTAAAGGTGTCATCTGGGAATGCAGTTACCTAATACTTGGAAATTGGACCTTCCAGCAGGAGAAAGAAACCACCTGTCTTATGGGAGACTGAGTTTGTTTTAGATCCTCTAGGTCTGAGAAGAATGTTTGTAGGAAGGCTGGTCCCAGTGAGCACATTTTTCAGGTAACCTAGAGTGTTTCTTCTAAGGTTCATGTTGGACAATACAACTTGTCAAGTTATGTGAACTTACTACATACTCTCTAGGTCTGATGTAATGCCCAGTATCTAGAGTAACAAGTTCCATAAGTGATTCTGATGGGTATGTGTATAGCCTTTCTTTTGGAACCAATTTTAACCCAGAATTTTCAGATACACATTTTCTCCAGTGCTTCTTGCCACAGCCTTGTGAAATTTCACACTATCTTTTCTATAGATCAAAGCATTAATGTTGAGCTCTCAATAGCCCTGTGTTTCCAGCACCAATAGCCTTGTGTTAAATCACTTCTCATCAGCAG
Seq C2 exon
AATCCCAGCATGTGAACTGGACATGATCACCCAGTTGGAGGAAGAACAACTATACATACTGGATCTTCAGGGAACTGAAGAGGGGACTGACCAAAAATATCTGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009152:ENSBTAT00000052672:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]