BtaINT0165538 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004262 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr7:2365515-2366394:-
Coord C1 exon
chr7:2366320-2366394
Coord A exon
chr7:2365817-2366319
Coord C2 exon
chr7:2365515-2365816
Length
503 bp
Sequences
Splice sites
5' ss Seq
TAGGCACGG
5' ss Score
0.06
3' ss Seq
CGCCCACCTTTTCTCTCCAGGTC
3' ss Score
12
Exon sequences
Seq C1 exon
GTTCTGCCTGCGATGTGGCGGTGTGGATCTCACCGCTGGCAGAGGCTCCTCGAAGGGCAACCCAGCGGTGACTAG
Seq A exon
GCACGGTGGCCAAAGCCGTATCGGGAGAGCGGGAGCAGCCTTGGGGTGGTGGAGCTGGTGGGAAGGGCGGCTGAAAACCGAGTCGGTCTGGGTAGTGGTCCGTTCTGAAGGGCGCTGATCTGACGCCCCAAACTTCCCTGGATGTATGGCCAAGGTTAGATTCCAAAGACAAAAAGGCCAAGTGTGGGCTCGGGTTTAGGGTCCGAATCCGCGGGTGCATGTGGAGAAAGATACGGTCAGGGTCACTGGCTTGTGATTTGGAACCAACTCCGGTAATCCCGTTTACGCTCGGTGGTAGATGCTCCTGGTGTGGTTCAGCTCCCTGTATCTGGAACTCGCTGAGGCCGGGTCTGCAGCGGCGCAACCACTGCAGCAGCTCCCCAAGGGACTTAGCTGAGAGGCAGAGGGCCGGTGGGTGGGTTGTACGATTAAAATAAGTTGCGTCCAACACCCCCACCCGACCCCCACAGATACACTGCTTCTCGCCCACCTTTTCTCTCCAG
Seq C2 exon
GTCACCCAAACCGGGTCCCAGAGAAGGAGGCCTGAGGCTAGAGAACAGCATAGCCTGAGAGACGTCTCGACAGTGAAGATGCAGCCTTCTTAGCTTCTTTTTTTGAGGAGAAAGAAGACGACCCTCCTTCCCTACTTCCTCTACTCCCCTCCCAGGATTAGGCAGGTGTCCAGGCAGGAGTCACACGTTTCTTGAGATCTCTCAGCATAATTTAAGGGCAAAAGGCCAGAGGGTGTGTAAAAAGTGTGAAATCGGGCTGGAGGATGCTTTTTTCAAGGAAAAGTCAAGATACAGAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004262:ENSBTAT00000016859:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGCCTGCGATGTGGC
R:
AAAAAGCATCCTCCAGCCCG
Band lengths:
347-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]