BtaINT0165693 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54942442-54942906:-
Coord C1 exon
chr18:54942747-54942906
Coord A exon
chr18:54942598-54942746
Coord C2 exon
chr18:54942442-54942597
Length
149 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
TGTCTCTTCTCTGTGTGCAGGTG
3' ss Score
11.9
Exon sequences
Seq C1 exon
TCACCAGCACAACAGGGGCTCCACAGACTGGGCAGAGCCAAGGAGCACGTACATTTGCAAGAACTGCAGCCAGATGTTCTATACAGAGAAGGGGCTGAACAGCCACATGTGTTTTCACAGCGACCAGTGGCCGTCACCTCGAGGGAAGCAGGATCCACAG
Seq A exon
GTGAAGGGGCGTGAGGCTGCATTCAGCTCACCAGAGTTGGGGAGAGGTGGGGGCCTGGCTGGGGGCTTGGAGCCAGGGCAGTGCTCCTCTGGAGGGGCCCTTGCTCCCAACCTCTTCCCCTTAAAGGGCTGTCTCTTCTCTGTGTGCAG
Seq C2 exon
GTGTTTGGCATGGAGTTTTGCAAGCCCTCAAGACAGGTGCTGAGGCCAGAGGGGGATGGGCAGAGTCCCCTGGGAGCCAGAAAGTGCCTGGACAACCCAACCGCAGCCTCTTTGGGGGTCCCTGTGGCCCCAGCAAACCGCCCCCCAGGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606:ENSBTAT00000061246:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=NA C2=0.808
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGGGCTCCACAGACTG
R:
GGGTTGTCCAGGCACTTTCTG
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development