BtaINT0166079 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023464 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr18:47280908-47287067:+
Coord C1 exon
chr18:47280908-47281068
Coord A exon
chr18:47281069-47286940
Coord C2 exon
chr18:47286941-47287067
Length
5872 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TATATGGTTCGTCATTTCAGGAA
3' ss Score
7.51
Exon sequences
Seq C1 exon
AGGCCCCGGGGCTGTGTACTGACCGGAGCTGTCTCGCCCTCTCTTCCACTAGCATCACCGTGAGAGGGGTTCGGCGTCCCAGGTGACCAGTTCTGGCTCAGAACGTTTGTTCCGGCCATCGGTAGGAAAGCCTTTGCGGCCCGGGAATGAGGATAGGGAAG
Seq A exon
GTAAGCGCTGCAGCACCTCGAAGTGTCTGAAACCCTGCACCTCAAGCCGCGAGTGTGCGTGAGAACCGCGGTGGTATAACGGTGTGCTGATGTTTGTGGGCGTGACTGAACTGGGGTGTGTCATCGGGACTGTGTGCAGTTGTGAGGCCGGAACTAGTAGATTTGCGTTTGTGTGACTTAATCGGGTTCAGAGCCTCTTGTGTGACCGGAGGTTGAGGTGGACTGTGTGACTCCGACCCCAGAGTCACAGCTGAAATTTTCTATCAGCCTTAGAGTAATGGCCCCCCGTCAGATATTTGAGATCCAGAGAAAAGACTCCCAGCGAAAAGGCTTGAACCATCTTGGGGTAAGAATGTTAGAACTGAACGTGCCCCCAGGTTGGCTCCTGGGAGTATCCCCGCCGCACTACATCATCGGGCGGGCGCGCGCGGACACACACGCACACACCCACATACCCCGCCACACTGCATCCTCGGGCGGGCGCGCCGGACGGACACTCACTCACTGACCCACCCACCTACGCTTTCGCAGACAGGTCCAAACCTTCCAACTGTAGGTTTCAGAACTGCAGAATTCCTCTCTGAAGTTCGATTCCAGTCCAGCACACCCGTTACCCTGGCTTTTCTCTAATCCTCGGAAGGGTTAGTATTTTTACACTTGGCTCAGACGGTAAAGCGTCTGTCTGCAATGCAGGAGACCCGGGTTCGATCCCTGGGTTGGGAAGAGCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTTTTGCCTGGAAAATCCCATGGACCGCGGAGCCTGGTAGGCTACTGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTTCACTTCACTCCGGGCATGCTGGGTGGTGGGTGGTGGGGACATATGTGGTCATGGCTTGCCCTATTCATCCTGGATGAGCTGGGCTCTGAAAAAGGCCTGTCTTAAGATTCCCTTCTTCCCCCATCTTGTCAAACTAAGAAAAGGGCTGTGTTGACGAGGAGAAACGAATTGCTGTTGCCCACCCAGAAGTCAAGGTCGAGGCTAGTGGGTGTTTCCTTTTGTTCTGTGAGATGCATTTTTATTTTTTAGGACCTGGGAACATTTGCTTCCTTCTCCTCAGTATGATCTGTACCTTAACTTGATATCCCGTCCCTAGTGCCTGTAGGTGCTCCCCTAGTTACTCAGACTGTAAAGGGTCTGCCTACAATGCAGGAGATCCAGGTTCATTCCCTGGGCCGGGAAGATCCCCTGGAGAAGTGAAAGGCAACCCACTCCAGTATTCTTGCCTGGACAGTCACATGGACAGAGGAGCCTGGCAGGGCTACAGTCCACGGGGTCGCAAAGATCGGACACAGCTGAGTGACTAACACTTTCAGTGCCTGTGTGCATATATCCATGTGGCAGATACTTCCCCTTGTGAGAATTTACACGTTTTAGGATTGTGGAGACATCCATGTTTTCTAATACTGTTACTTAAGAAAAACAACATTCTTAAACCTAGTTCTAAACTTCACTGATACTCTAAGAAAAAGCAGTTGTGAAAAATCTCAAAAAAATTTACTAGTAAGGAAAAAAAGGGTATTCTGGTATTATTAAAGATAATTTATCAAAAAATTTAAATTGTAATGAAAAGTATTAAAGATGATTTTATTTAATAAATAGAATGGACATGTCATGTTTTTCATTTTATTCATTGTATATAATAAGCCATTTTAAGTTCTTTATTATATTAACAGTTAACAACAACCCTATAAGATAGATACTGTTATTATTCTCCAGTTTGTCTGTGAGGAAGCAGAGGCACTGAAAATGAAGTAACATGTCCAAAGCCTCCTTCCTGGTTGATAACTGTCAGAGATTAGATTCGCATCCTGGATCCAGCCAATAAAACCTGTGAGAGTCAGTCACCTCCCAACATTGTACATGTTCTGTTTAGTCTGCTTAATGTACTTGGCAGTTTATCATGGATAACTTTTCTTCATTAATTAATATGAACCAGTATCATTATTATTAATAATTGTATAGTATGCCATCATATAGTGGAACATAATGTATTTAGCTTGTTGACTATTGTTTGGTATTCTTTTTATTATAAATTATTCTTTGAAGAACTTCCTTGCATATATTTCTTTGTGTGTTTCTGAGCTGCCTATTCTATTCCATCAACCTATATGTCTAGTTTTTTTTTTGGGGGGGTGCCAATATTGTTTTGATTACTATTGCTTTGTAATATAGTTTAAAATCAGGAAGCATGATACCTCCAGCTGTGTTTTTTTCTCAAGATTGCTTTGGCTGTTTTGGGGCTTTTGTTGTTCCATGTAGATTTTAGGGTTGTTTGTTCTTATTCCACAGAATAGTGCAGTGGAATTTTGATAAGAAGTTGCATGTAATCTATAGATTATTCTGGGTAGTATGGACATTTTAACAATGTTCTTACAATCTGTGAGCATAGAATATCTTTTTATTTGTGTCATCTTCAGTTTCTTTTACCAGTGTCTTAGAGTTTTTAGTGTATAGGTCTCTAACCTCCATGGTTAAATATATTCCTAGTTATTTTATCTTTTCATAAAATTATAAATGTGATTATTTCTTAGTTTCTCTTTCTTATAGTTCATTATTAGTAGATATACACAATGGATTTTTTAAAAATTTATTTATTTTTGACTGTGCTGGGTCTTCACTGCTGTGTTCAGGCTTTCCCTAGTTGTGGCGAGTGGGGGCTACTCTCTAGTTGTCGTACATGGGCTTACCGCAGTGATTTCTTTTGTTGTGGAACATGGGCATGTGGGCTTTGGTAATTGTGGCACACAGGCTTAGTTGCCCCATGGCAAGTGCAATCTTCCCAGACCAGGGATTGAACCACCCCTGCATTGGCAGGTGGATTCTTAACCACTGGACCACCAAGGAAGTCTCACAACTGACTTTTATATGTTAATTTTGTAGCCTGCAGCTTTACTGAATTCTTTTATTAGTTCTAGCAGTTTTTGGTAGCGTCTTTAGGATTTTCTATATGTAATATTTTGTTGGCAAATAGAGGTGGTTTTATTCTTCCTTTCCAATTTGGATGCCTTTATTTCATTTCCTTGTGAAAATTCTTGATACATAGATATGCTATTATGTAACTGCTGAGAAAATGAATCCACACCTTTTCACCCTAGGTTGTAAGAAAGAGAATGACAAATGAAGTCATACAGGAAGCAATGTAGATGATTCTGATTGAAAATAGTGATGAGCCCAGTGGATTCTGGAAGTTATTGTTCTGATAGCAGGCAGGCAGGGCTGCCAGTGCAGTAGTTTGTCAATTGGAAAAGACCCTGATGCTGGGAAAGATTGAAGGCGGGAGGAGAAGGGGACGACAGAGGATGAGATGGTTGGATGGCATCACTGACATGATGGACGTGAGTTTTAGTGGGCTCTGGAAGTTGGTGATGGACAGGGAAACCTGGTGTGCTGCAGTCTGTGGGGTTACAAAGTGTTGGATATGACTGAGCGACTGAACTGAACTGAATGGCTGCTAGAGATGATCCTATGAATTTCTCTCTTTGTATCTATTTAAGCAGATTTGTGAAACTTTGGAAGAGATTCTGGTTTAGATGATGTGGTCCCTTGAAATGTACAAGTTGGGATTAGATTTGTCCATACCCCCTCAAATCTCCCTGTGTGTGTGTGTGTGTGTGTATATATGTGATGGGGAGGTCCAGAGAAGAAAAAGAATGTATTAAATTGAGTCATTTTGAGAGTTCTGAGGCCTATCTTATCTCATGGCCTCCTTTTTCTCCCCTCCCCTTAGCTCTGGCCTCTGTGAACTCTGCTTCTCCAGGGAAGTAAACCGCAAAGAGGACTGACCAGTTCTTGAATTTCTAAACCATGGCCCATGTAAGTTGCGGTTTCTTTCGCCTTGTGGAAATTAAGGTCCTATGAACTTTTATGTATCCTGAAACTTCTTACTTATCAGAGCCCCATCTAAGGACCCATTTCCTCCAAATCCAATGAGAGATGAGGCCAAATAAATAGGACAGTGCCCTTCTTTTGAGTCCTCTTTTTTCCAGTTATTGTTCACGTATTCATAGAACAAATCATTCAGCATCCCTCTTTTTTTAAAGTATTATTTCTTTGGCTGTGCTGGGTCTTAGTTGTAGCACATGAGACCTTTAGTTGCAGCATGTGGGATCTAATTCTCTGAGCAGGGATCAAACCCAGGCCCCCTGCATGGAGCATGGAATCTAAGCTGCTGGACCACTAGGGAAGTCCCTCAGCATCTCTTATATGTGCTCAGTCTTCTGCTAAAAACTGCAATGAAGCAGAAATGAAGTCCCTTTAAGGAGATGTTTGGCCATCTCTTTTGAGTAGTTGAGAGAGCATGGGCTGATTTGATTGCTCATAGGAAAACTAAATTTTTCCAAACTTGAGTTTTGTAATTAGGAAAGATTTGCTGTTGGTTGACCTTAGCGCCTAGGGTTTCCCTGATGGCTCAGTGGTAAAGAATCTGCCTGCAATTCAGTCCCTGGGTCAGGAAGATCCCCTGAAGGAGGAAATGGCAACCCACTCCAGTATTCTTATTTGGGAAAATCCCATGGACAGAGGAGTCTGGTGGGCTACAGTCCAAAGGATTGCAGAGTCAGACACAAATGAGCGACTGAGCATGCACATATGACCTCAGCTTCAGTGTATGCTGAGATCTCCTCTTGTTTTGTGTAGCTTTTAGGACTAGGTAGGGTTATGGTTGGGTCTAGTATGCAGAGACATTAAGTATCTTCTCTGGAAATCCCTAAGAGCTGTACATCATTTGTATTAGAACAGGATGAGCTAGTCTAGAATGACATCTTTGTATTTCTGGATTATTGGTATCCAGAATCTACATTATCCTCTAACTTAGGAACATGGAATGCATACAATGAGGGATGGAAAATGACAGAAAAGAAGATCATGCAGGCACATGCAGGCCTCAATTCCCCCTCAGAATTGAGGAGGACCTTAAAAATTTTGCATAGACAAAAATATTGGAGTATATAATAATTAGGTCTCACATATCCATTGCATACACCCAATTTTAAGTTCATTAAAGAATTTGTCATAACTGGGTAAATGCATATGATCTGATTCAATGATGACCTTGGAGGAAATTCTTTAATTGTATTCAGATCCTTTTCTAACTGGAATTACCAGGAAAACTTAAAAAAAAAATCTGTTCTCGGGGCTTCCCTGGTGGTCCATTGGTTAAGAATCTGTCTTGCGACGCAGGGGACACTGGTTTGATCCCTGGTCTTGGAAGAACCCACATGCCATAGGGCAGCAAAGCCAGTGCACCACAACTACTGAGGCCGTGTGCTGTAAAGCCTGTTCTCTGCAACAAGGGAAGCCACCACAAAGAGATGCCCTTGCACTACAACTAGAAAAAGCCCATGTACCATGCTGAAGACCCAGTGTAGCCAAAAATAAATACATAATTTTTTTTAAAAAAGGATAAAACCGTCTTTTTTTTTTAAAGCAACAATCTGTTCTTTAAGAGGAAAGGGTATAAGAACACATTTCTCGAGAATTTGTGAGGGAGACATAGAACAGGCAGAAGGCTTATATAGAGTATTTCATTTAATTAGAAAAATTTTTTCCTTTCCCATACGTGTTTGGGTAGTTAAGATATGCCAGAGTATATAAAAGGCTTTATCTGTAGAAACACAGTTGGTCAGGGACCCATAGGCATTCTGCTGCAGGCACTCTCATTTCCTAACTCAGTGTTACAGGTTTCTAGCCCAAACCTGTTTGCTTGATTGGTTTCCAGCAGTATCTCTTTCATTTTTTTCCCTCTTTCCATCTTAAAACAAATTTTATTTAATTTTAGTTGTATTATATGGTTCGTCATTTCAG
Seq C2 exon
GAATCAGTGATGTTCAGTGATGTGTCCATCGACTTCTCTCTGGAAGAGTGGGAATTCCTGAATTTGGAACAGAGGGATTTGTATAGAGATGTAATGTTGGAGAACTACAGCAATTTGGTCTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023464:ENSBTAT00000053827:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development