BtaINT0166082 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008836 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr8:84934911-84937203:-
Coord C1 exon
chr8:84937165-84937203
Coord A exon
chr8:84934962-84937164
Coord C2 exon
chr8:84934911-84934961
Length
2203 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
TCTTCTTTCTGTCCTCTCAGCTG
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTGGGGTTCTGCTCGGAAAGTGAAGGGTGCGCACCTGGG
Seq A exon
GTGAGAGTGCGAGGGGGCGGGGGGTCAGCTGGGAGGGGGTGCCTTTGTGCCTAGGGATGAGAGCGGAAAATCTTTGACACGCACTCCCACCAACGCTGGTGTACATGCTCGAGCGGGCCCTCAGCCTGGGGAAGGCCAGTAAGGAGTGACCCGGGCCCTCGGGCTCCGAGGGTGCAGGTCGGGTTGGTCCGGTTAAGAGCAGGTGTTCAGTCTAGGCCTGGTTGTGTGGGACCTTGGATTTGGCCTCGCCTGCAGCCTAACAGGGGGAAAAGCCCATGTCGGCGACAGGAGAGAGAGTGAATTTATACCGCTGATGATGGCCATGGGTCTGCAATGAGAACCCTACTACGGAGCCAGAAGAGCCTGGGTAAATGCCAGGTCTGTCACCTGGAAGCAGGGTTACAGAAGGAACCTGGATAAGAGTCCAGTTTCTCATGAAAATGATACTAGTGATGACTGTTTCATGGCGTTGTTTTGAAACTTAGACCTAAGTCATCCCTTGCAAAGTATTTACACAAGTGCCAGATAATGAGCACTGAATAAGTTCCAGTGCTATTATAGTTGGAAGACACTTTATTCTTTTTCACTGGATGGCTTTATGTAACCTCACAACCACTTTAACAAAAGGGGAGGCTCAGGGTGGTGGAACGATGTGCTCAGGTCATAAGTTAGTGGTGAGGGAATTCAGATTGGAGAGTAAGTGTGCTTTACTTACAACCTCAGGCTTATCTAAATATCACACCAGCCTAAAACCGTCATTGTAGCCTTCACAGCCCTTAATATAGTGGCCTGCCCCCAGTTTCCAGAAATACAAGGAACGTGAATGTAGATGGAATCCTACCATGTGTCAGATGTGTTCTGGGAATTCTACTGTCTCTTCCTGTCACTTGGGGCAGACAGCGGTCCCTGGCCTCTTCTGCATTGTCAGGAAGTCTCTCTTTTACGTGTAGTATTATAATAAATTCCAAGAATTAGGCGTTTGCTCCTAAAATGAATTTGTTTCTTAGATCCACATCCCACTTACCTTGAAATAAAGCCATCCTTGTGAGGTTGGAAGCAGGGAGTCTCTATAAAAGGGAGTCTTACCTGGAAGAGAGCATGCATAAGACTTTAGACCTCGCTCCAGAATCTCCTAGCAGACACAGACTGGGCCTAGAAAGGAGTAGATGCTAAATTTGCAAGATCAGAAGCTGTTCTTAATCCCCCTGCTCAGAATGAGCCAGTCTTGGTGATGATGCCACCTCCAGAAGCCACCAAACTCTTGACCTTGGGGAGTTTGGGCCATTGCTGAGAAGAGCAAAGTGAGCTGAGGTGGTCCAGGGGCAGGCTACTCAGGAAGAGACATTTTGTTGGATAGCTTGTAAGGGCAAGGGCTAGGGGTAAGAAATAACCAGCAGAGGAAGGAAATGCTGTCTCTCCTCCCCTTGAATGGCCCCACTTATTACAGATGCTGTGCTGCTGTCACATGTGTCCATCACATGTGACATCCTGACTTCACAGGATCCCAGGATGATAATATGTGAAGGGCTTTCCAAGGTCGTCTATTTTAACTCTCTTGAAAACTTTAAAGACATTGAACCTGAAAGGTTCAGTAATTTGTCCAGGGAAACTCAGTTTGTGACAGAATTAGGAGAACAGTGCACTCGATGCTGTCATAGGTTAGTCACCAAAAGCATCTTATCAAAAAGGCCTTTTAACAAATACATCACAGCTAAAACAATTTAAAATTATTGCCTTATAGCATCCTATCTAGGCTTTCTGTGGATTGTTTATACCAGGGGGTAAATAATAGTATTAATAGTAAGAAAAATAGATAAATGATTCATACTGAATATTTTTCTGCTAAGTTAGTTTTAATGAAAGAATAGTGTCTTATTCTTTGGTGTATTTGATTAAACTAAATCTCTTGTTTTTATTTATTTGTGTTAGAAGGACACATGTATTATTTTTAAACAGTTGAGAAAAGTTTACATTCACTTGGTAAAAAACCACAGATGTAATCCTCATGGTCATCTCAGAGTCACACAAAGAGAGGTGGTGCCACCTGTACATGATCCCTCTCATGCCTTTTCAAGGCCCAGAGGAAGATGAGGAAAATAAGGAAGATGATCCCCAACTGGGGTGCTGAGATTTGGGGAGGTGAATCTGGGAGCTATACAACAGGTTAAATCTCATGACATCCATCTTCTTTCTGTCCTCTCAG
Seq C2 exon
CTGAACCACAATTCTCTACTCTCCCAAAAGCAGAAAATGAACATAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008836:ENSBTAT00000011635:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]