DmeALTA0000182-1/3 @ dm6
Alternative 3'ss
Gene
FBgn0011747 | Ank
Description
The gene Ankyrin is referred to in FlyBase by the symbol DmelAnk (CG1651, FBgn0011747). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is 4:115074..129849. Its molecular function is described by: cytoskeletal anchor activity; spectrin binding; ion channel binding. It is involved in the biological process described with: signal transduction; protein localization to plasma membrane. 10 alleles are reported. The phenotype of these alleles manifest in: ovariole. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period.
Coordinates
chr4:115085-116004:-
Coord C1 exon
chr4:115258-116004
Coord A exon
NA
Coord C2 exon
chr4:115085-115185
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CAGATCAATTTTCACAGCAGCCG
3' ss Score
0.7
Exon sequences
Seq C1 exon
TCTAGTCCGATAAAAAAAGAAGTCGCTAAGGAAGTCCATTGAAGAAGGACCTACATTTTCAACCTCCAACGCAGTCCAGGAATGGCTGCATGCAGTCGAAAATGGACTGCCAAATGGAATGTGGCCATTAACTCCTCGAAGTCAGCCTGTGTAACTTTTACCCTGCGGCCCGGAACTTGCACAGATCTGACTTTTGATGGAAACCCCGTCAACAATGTCACATCGCACTGCTACCTAGGAGTTCATCTAGATCGGAGACTGACCTGGAGGGCCCACATCACGTCGGTCAAATTCAAGTCACTGGCGAAACTAAAAAAGCTCGACTGGCTCTTCCACTCCAGTAAACTACAAATGAGCTCTAAGGCTCTTTTAATCAAAGCCATACTTGCTCTAACGTGGAGTTATGCCATCCAGGTGTGGGGAACTGCCGCCAAATCCCAGCTCAATAGGCTCCGTGTGGTCCAGTCGAGAGCTGCAAGCCATGCATCTGGGCTCCCCTG
Seq A exon
NA
Seq C2 exon
CCGTTATGCCGACAGGCTTATGGTCCACCCGAATCAACTAGCAAACATCCTAGCTAATCCCATCTCCCTCCGAAGGCTGAAGAGGGTACACCCCACCGATC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0011747-24-26,24-25,24-24-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCAATAGGCTCCGTGTG
R:
GATTCGGGTGGACCATAAGCC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)