DmeALTA0001143-2/3 @ dm6
Alternative 3'ss
Gene
FBgn0029893 | CG14442
Description
This gene is referred to in FlyBase by the symbol DmelCG14442 (FBgn0029893). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (5 unique). Gene sequence location is X:6689296..6695007. Its molecular function is unknown. The biological processes in which it is involved are not known. 8 alleles are reported. The phenotype of these alleles manifest in: mesothoracic tergum. The phenotypic classes of alleles include: flight defective; pain response defective; fertile; visible; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:6692403-6695007:-
Coord C1 exon
chrX:6692943-6695007
Coord A exon
chrX:6692640-6692864
Coord C2 exon
chrX:6692403-6692639
Length
225 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
ACACTATCAATCTAAACCAGGCG
3' ss Score
4.99
Exon sequences
Seq C1 exon
AGAGCGAGGAGGAGTATCGCAAGCGACTACTCCGGAATGCAGAAGCCAATCGCCAGAGACGCCAGAATGAATCCGACATAGAGCGGGCCATGCGGCTAGTGAGGAATGCGGCCAGGCAACGGCTACGCCGGGCCATGGAGTCGCCGGACCAGAGGGCCAAACGGCTGGCCAAATTGGCCGAAAGGATGCGCATGTATCGCGCCAGCGAGACGAACGATCAGCGAAAGCTCCGGCTGGCAGAAATGGCGGCAAGGGCGCGCCAAAGGATCGCCAATGAGTCACCGGAGGAGCGGAAGGAAAGACTGAGAAAGCTGAACGATTATGCCAAAAAGGTCAGAGAAAAGAAGAAGGTACTGAAGCATGTTGTGGTGCACGGTGGTTCGTCGTCGGTGGTCGTCTCAACGCCGACATCCTCCTCGTCGTCAACGGACCAGCAGCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAG
Seq A exon
GCGACCACCACAGCGACGACGACGACAACGGACGAGGCAGGCACCCCGCAGCCCGCGGAGGATCAGCAGCATCTGGTGACAGCAGCCGCCTATCAGCAACACCAGGCCCTGGCCGGAGTGGAGTATATGGGACAGGGCATGTTTCTGGCGCCCGGCTCCCTACGTCCACCCATGCAACTGAAGCAGGAGCCACAGACGCCGCAGCAGCAGCAGATTACACAGCAG
Seq C2 exon
CAGCTGCAGCAGCAGCATCAGCGATACACCATCACCGGACAGCAGCAGCAACAGGTTACGGCTGCTCTGCTCGAGGGCACCGAGCCGGGCAGCATCTTTGTGCAGCAGATCTATGGCGATGAGGGTGGCAAGGGCACCGCAAAGCTGCTCCAGGCCCATGTGCCGCACTTCAGCATCGCCGGTGGCCAGCTGGAACTCTACCCGCACAAATATGCTGCCAAGAAGCAGGAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0029893-2-2,2-1,2-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.928 A=NA C2=0.660
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0308575
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0289996, FBpp0308577
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGGATCGCCAATGAGT
R:
TAACCTGTTGCTGCTGCTGTC
Band lengths:
300-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)