DmeALTA0001546-4/4 @ dm6
Alternative 3'ss
Gene
FBgn0031489 | CG17224
Description
This gene is referred to in FlyBase by the symbol DmelCG17224 (FBgn0031489). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is 2L:3016441..3018308. Its molecular function is described by: uridine phosphorylase activity. It is involved in the biological process described with: nucleotide catabolic process; nucleoside metabolic process. 5 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages, at stages throughout the pupal period.
Coordinates
chr2L:3017959-3018308:-
Coord C1 exon
chr2L:3018164-3018308
Coord A exon
chr2L:3018018-3018081
Coord C2 exon
chr2L:3017959-3018017
Length
64 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TAAATTATATGTGTTTGTAGGTA
3' ss Score
7.29
Exon sequences
Seq C1 exon
ATCGCCGCAGTACTTTGAGTGCAGCCGGGCGTAGGTGTTGATTTGTTGTGGTGTTGATTTTTATCAAATATACAAATACATGTGGTTCTAAATGACACACCCCTATCTTTGTATAAAACGTATATTTATATAAATACATTTCTTG
Seq A exon
GTACTATCTGAAAATGTGCAAACAAAAGCTTACTGAAAATGTAGACAAAATTGAAAGATTTCAG
Seq C2 exon
ACTTTTATCCACGTTTAACTGGAACCACCGACGACGAATCAACTCAAAATGTCTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0031489-0-5,0-4,0-3,0-2-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0077356
Main Skipping Isoform:
FBpp0077355
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0290039, FBpp0304019
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCGTAGGTGTTGATTTGT
R:
GTGGTTCCAGTTAAACGTGGA
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)