DmeALTA0002016-4/5 @ dm6
Alternative 3'ss
Gene
FBgn0051100 | CG31100
Description
This gene is referred to in FlyBase by the symbol DmelCG31100 (FBgn0051100). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 3R:8995229..9003650. Its molecular function is described by: carbohydrate:proton symporter activity. It is involved in the biological process described with: glucose import. 5 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; some die during larval stage; partially lethal; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period, during early pupal stages.
Coordinates
chr3R:9000287-9001886:-
Coord C1 exon
chr3R:9001769-9001886
Coord A exon
chr3R:9000531-9000646
Coord C2 exon
chr3R:9000287-9000530
Length
116 bp
Sequences
Splice sites
5' ss Seq
ACGGTACAA
5' ss Score
4.76
3' ss Seq
AATTGTGTCAAAAACTTTAGCAC
3' ss Score
2.8
Exon sequences
Seq C1 exon
AGTTTGTTTTGACCGCGCGACGCGTTCTGGTCTAATCGCTAGTTTCTCCAAAAAATCGGTTTCGTACTGAAAATATACGAAAAAGCCTTTATATTTTTTACACCTTACTTACTCCACG
Seq A exon
CACTCCCAATCGCATAATAAGCAAACCTAAAGAAAGCGGTCGAAACAAGAAGACCAATAAATGTCCAATTATAAGATTTTTGTTTGTCTGTGACTTTGAAAGGTTTTGCCACTTAG
Seq C2 exon
CACTCACCGTCGAAACCATCGATAAATAATGATAATTGTCAATAACAATGGCCAAATGATTACCAACTGAGTGAAAAGAGCCACAGTTCGATCGAAATACGTGAACCTTGCGCACAAAACAGGGACTAGCAGCAGCCACTTGAGCAAACAGAAAGGTGCATTAAGTATACGCCGCGCATCAAGTATACGCAGCGATGTCCAATGGCAAGGCCGCCACAGCTGGCGCAACAGCTGAGAAAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0051100-1-5,1-4,1-3,1-2,1-1-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.412
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0081489
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGCGTTCTGGTCTAATCG
R:
CTCAAGTGGCTGCTGCTAGTC
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)