DmeALTA0002044-1/2 @ dm6
Alternative 3'ss
Gene
FBgn0051213 | CG31213
Description
This gene is referred to in FlyBase by the symbol DmelCG31213 (FBgn0051213). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 3R:19972898..19979569. Its molecular function is described by: lipid transporter activity; ATPase-coupled transmembrane transporter activity; ATP binding; ATPase activity. It is involved in the biological process described with: transmembrane transport; lipid transport. 5 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of no expression detected. Peak expression observed during early pupal stages, in adult male stages.
Coordinates
chr3R:19978400-19979026:+
Coord C1 exon
chr3R:19978400-19978465
Coord A exon
NA
Coord C2 exon
chr3R:19978537-19979026
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
3' ss Seq
TTTTAATATTTTAAGCGAAGCCC
3' ss Score
-3.14
Exon sequences
Seq C1 exon
ACTGAAACGAAGATTTCAACAACTAATAGCTGATATGGCAGAACTCTTTCCATTGGCTACATTACA
Seq A exon
NA
Seq C2 exon
CCCTTGAAACTTGTCTCATATATCACATAAATATTAATGTTACAACGTTGGCCAACTTGTTCTACCAAATGGAAAAGATACGAAATGAAGGACTCCTGGAGGACTATTCCATAACGCAGGTTTCCTTGGACGAAATTTACAGAATACTGAATGATGAAGAAGATCCGAATCTCGTAGACCTAGACTCTACTCATAATAGCGAAGTTTTAGAGGACATACGAGACACAACGAGAGACACAACGAGAGGGACAACGAGAGACACAAATTTAGTATCAGATGAGGGTATACAAAAAGAAAAGGTTAAACGGAAAAAAGTGGAAGAGGAAGATAGAGATAGGCAGGAAAGTACCGAAACTAGTAAACCGAAAGTAAAGAGAAGTCCCGCAACTCAATCTGATAGTACTGATACCGATGAAATGGAAGTAGAAAAAGGCGAAAAATTAAAAAAGAAAACTTCAACATTTTTTCAAGATTGAAAATCGAACATTTT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0051213-7-9,7-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0307228
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0307229
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAACTCTTTCCATTGGCT
R:
GAACAAGTTGGCCAACGTTGT
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)