DmeALTA0003017-1/2 @ dm6
Alternative 3'ss
Gene
FBgn0263072 | CG43347
Description
This gene is referred to in FlyBase by the symbol DmelCG43347 (FBgn0263072). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is X:10602641..10620190. Its molecular function is described by: DNA-binding transcription factor activity, RNA polymerase II-specific; sequence-specific DNA binding; DNA-binding transcription repressor activity, RNA polymerase II-specific. It is involved in the biological process described with: negative regulation of transcription by RNA polymerase II; regulation of transcription by RNA polymerase II. 5 alleles are reported. No phenotypic data is available. No phenotypic class data is available.
Coordinates
chrX:10618733-10620190:-
Coord C1 exon
chrX:10619966-10620190
Coord A exon
NA
Coord C2 exon
chrX:10618733-10618986
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGA
5' ss Score
3.68
3' ss Seq
CAAAATACAGAAACCTGCAGTGT
3' ss Score
-4.56
Exon sequences
Seq C1 exon
GAGTAACGGCATATGAGCGCTCGCAGAGAAATCGCTAATCACGAACGGCGGACGACAAAAGCCCAAGAAGAACAGGCAGAGGGAAAAAAGAAAGCAAAAAATGAAAAAGGATTGCCAACAGGAGCAGCAGTTAAATAATTAAACAAGTGCCAGATCGCAAAACAACAGTGTGCAATTTTTTTTTTAACAAGTTATTTTCGAGTGAAAAGCCGTGGAAAACTGTGT
Seq A exon
NA
Seq C2 exon
TGTACAACTGAAAAGCGAGAATCTTTGTAAAAGCGATGCAACAGCAACGACAACAACGACAGCATCACCAACAACAACAAAAAGTGTAGTGGGTCGCACGCGCGACTTGTGTGTGTGAATAATGAAGAAGAAGCAGAAGCAGAAGCAACAACAACAGCAGCAGCAGAGGCAGAGCAAGGCGCCATCTGAAGCGGAATCGGAGGCAGACCGCCCCGGCAGCAACAGCAGCAGCACCAGCAACAACAAGCATTCGC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0263072-3-2,3-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0297865
Main Skipping Isoform:
FBpp0297864
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0304664
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTGAAAAGCCGTGGAAA
R:
TGATGCTGTCGTTGTTGTCGT
Band lengths:
95-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)