DmeALTA0003696-2/3 @ dm6
Alternative 3'ss
Gene
FBgn0038727 | CG7432
Description
This gene is referred to in FlyBase by the symbol DmelCG7432 (FBgn0038727). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3R:19665007..19670827. Its molecular function is described by: serine-type endopeptidase activity. It is involved in the biological process described with: proteolysis. 5 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of no expression detected. Peak expression observed within 12-18 embryonic stages.
Coordinates
chr3R:19668205-19669807:+
Coord C1 exon
chr3R:19668205-19668291
Coord A exon
chr3R:19668355-19668368
Coord C2 exon
chr3R:19668369-19669807
Length
14 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
AACTTTAACCCTTAAGGCAGCGT
3' ss Score
-2.33
Exon sequences
Seq C1 exon
TACTTTCCTTGGGAACATTTCCGACCGCTCAGGGACAATCGGATGCCGGGAACGATGAGGAGCAACCACTCCATTTGACCAACGACG
Seq A exon
CGTCTTTCTTTCAG
Seq C2 exon
CCACATTTGCACGATCGACGACTGGGTCGCCAGTTGATCGAGGATCTCGCCGAGAGCCAGAGCTCGGCCAGCAGTGTCAGCAGCGGCAGCAGTCAGTCCGGCTCCGCCTACGAGGATGACGATGACGACGTCGAGGGTTCCAGTGAGTACTACGATAGCGACGAGGAACAGTCCGAGGGCAGCAACGAATCCCTGCCTCGTTTGCTCTCCCAATCCACCTTTAATCGCATCTCTGAGACCTTGGGAGCGCTCAACCATGTGGGGCACATGCTGGTGGACATAACTCGCGGTGGACAGGATCAGGCCAAAATGGAGGGGGCGGAGAAGAGTGAGGATACAAGCCAGGACAATAGTCAGTCGGGTGGATCGTCCAGCGCAACCGCAAGTGCTTCCAGCACCACCGAAGTGGTTCCCTCTTCCACATCCTCCCCACGAGGAAATTCCGAGCAACTGCCAGGAGTCTCAGACAAACTTATGGATCCTCTACCGATTACACTCTC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0038727-1-3,1-2,1-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120323=CLIP=WD(100=8.9),PF0008921=Trypsin=PU(22.0=10.9)
Main Inclusion Isoform:
FBpp0290431
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATTTCCGACCGCTCAG
R:
CCAGTCGTCGATCGTGCAAAT
Band lengths:
101-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)