DmeALTA0003852-2/3 @ dm6
Alternative 3'ss
Gene
FBgn0027567 | CG8108
Description
This gene is referred to in FlyBase by the symbol DmelCG8108 (FBgn0027567). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 3L:9864639..9870674. Its molecular function is unknown. The biological processes in which it is involved are not known. 14 alleles are reported. The phenotypes of these alleles manifest in: sarcomere; embryonic/larval somatic muscle; Z disc. The phenotypic classes of alleles include: lethal - all die before end of pupal stage; some die during pupal stage; female sterile; lethal - all die during larval stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-12 hour embryonic stages.
Coordinates
chr3L:9864639-9865398:+
Coord C1 exon
chr3L:9864639-9864802
Coord A exon
chr3L:9865080-9865083
Coord C2 exon
chr3L:9865084-9865398
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTCCTTGTGCTGCAAACAGGAA
3' ss Score
8.64
Exon sequences
Seq C1 exon
ACACTTCACTTTGTTCGCCATTGCTAGACAAAAAATTGTTTCGAGCGAAAAAAGTAGCTGATAGAAAAGGTGAAAATCAGAAGTTAAACGTTCAGTTAAAACTGAAAAACAGACAGAAAAGCAGTGCTTCATTGTGCCCATTAGTGAATAGTGTTAGAGCAGAG
Seq A exon
GAAG
Seq C2 exon
AGATTGGAATTAAAGATGCGTGGACGCGGCGGATTCATTCCACGTGGTGGTGGCACCACTCGCGGTGGCTACTACAATAATCGCAATTCCAGCAACTACGTTAATACTCGCACCCAGGGCAATTACCGACCCAATAATGGCCGCTACGAGAATAACTATCACAACAACAACAATCGCTACAACAACCACAACAACAGCGGCGGAGGAGCAGGAGGCAACAGCCACTACGACAACAGGAGTCGGGACAAGTTCACTCACCACAACTCGAGCAGCGGGCGCTACGAGTCCAGCTCCTCGAGCCACAAGCGCAGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0027567-2-2,2-1,2-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0076069
Main Skipping Isoform:
FBpp0076068
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGACAGAAAAGCAGTGCT
R:
GAATGAATCCGCCGCGTCC
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)