DmeALTA0003966-2/2 @ dm6
Alternative 3'ss
Gene
FBgn0027602 | CG8611
Description
This gene is referred to in FlyBase by the symbol DmelCG8611 (FBgn0027602). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is X:17413267..17422145. Its molecular function is described by: ATP binding; RNA binding; RNA helicase activity. It is involved in the biological process described with: ribosome biogenesis. 4 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages, during early larval stages, in adult female stages.
Coordinates
chrX:17419936-17422145:-
Coord C1 exon
chrX:17421983-17422145
Coord A exon
chrX:17421921-17421923
Coord C2 exon
chrX:17419936-17421920
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TATTGTATATTTGATTTCAGCAG
3' ss Score
4.61
Exon sequences
Seq C1 exon
AGTGGCAAACGAAGAAGAAGAGCCACGCACGTTTTATTCAATTCGTTATTATTTACAAAAGTTTCGCGATTCTTCTTTGGTTGCGAGCATCAATTGTGCCAAAATGGTGGAAAATATATCACTGAATGTTACTGTAAAGTCGTCGGCTCGGAAAAATCAACAG
Seq A exon
CAG
Seq C2 exon
TCGCCCGCGCTTTCGGTTAAAAAACGTGCACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCCCAAAGTCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTGAACCTACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCAGTTTCCTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGCAAATGCATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCACCTGTTAAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAGCCGGTGGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATTGGGCAAGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGCAGATCACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAATTACCCACGCCCGGTGACCTTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0027602-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0027024=DEAD=WD(100=28.1),PF0027126=Helicase_C=PU(11.8=1.4)
Main Inclusion Isoform:
FBpp0074214
Main Skipping Isoform:
FBpp0074213
Other Inclusion Isoforms:
FBpp0309483
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGGCTCGGAAAAATCAAC
R:
CCTTGACTTTGGGCTTGTCCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)