DmeALTA0004003-2/2 @ dm6
Alternative 3'ss
Gene
FBgn0031520 | CG8837
Description
This gene is referred to in FlyBase by the symbol DmelCG8837 (FBgn0031520). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 2L:3320245..3323141. Its molecular function is described by: carbohydrate:proton symporter activity. It is involved in the biological process described with: glucose import. 6 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: some die during pupal stage; viable; partially lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of no expression detected. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.
Coordinates
chr2L:3320245-3320647:+
Coord C1 exon
chr2L:3320245-3320445
Coord A exon
chr2L:3320515-3320517
Coord C2 exon
chr2L:3320518-3320647
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGGGTTAGA
5' ss Score
1.78
3' ss Seq
TTAACTGATTCTCATTTCAGCAG
3' ss Score
6.91
Exon sequences
Seq C1 exon
AGCTGCCACGGCAGACGTCCTCAGATCTTATCGCCAAATCGTTCTGTATGCTCACGTTGGGCAAATATATATCTGCATATTGCTCATCCCGGCCATCTCAACTACACGAAAACACGTCCGGACACAGTCTACGGCCGTTTCGTGGCCGGTGGATAGGGTTCAACTGGTGGCGCATAGTAGCGTTGTTATCTCTGGACGAGG
Seq A exon
CAG
Seq C2 exon
TCAGTGCAGTGAATTGCAGGTGTTTTCCCCCAGGTTTCCTCATTGGATTTTGGATACAGAAGCTATATAAAAATGTGCCTGCCCAAAAGAGTGGGTGGTCCGGCCATCCAGAGTGTTGCCACGGCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0031520-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008319=Sugar_tr=PU(1.1=25.0)
Main Inclusion Isoform:
FBpp0308629
Main Skipping Isoform:
FBpp0077271
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGGGTTCAACTGGTGGCG
R:
CCAATGAGGAAACCTGGGGGA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)