DmeALTA0004946-4/6 @ dm6
Alternative 3'ss
Gene
FBgn0035538 | DopEcR
Description
The gene Dopamine/Ecdysteroid receptor is referred to in FlyBase by the symbol DmelDopEcR (CG18314, FBgn0035538). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 3L:4367649..4380387. Its molecular function is described by: dopamine neurotransmitter receptor activity, coupled via Gs; ecdysone binding; G protein-coupled amine receptor activity; G protein-coupled receptor activity. It is involved in the biological process described with 12 unique terms, many of which group under: response to external stimulus; response to stress; system process; response to chemical; response to sucrose. 21 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: behavior defective; learning defective; phenotype; mating defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during late pupal stages.
Coordinates
chr3L:4379421-4380387:-
Coord C1 exon
chr3L:4379931-4380387
Coord A exon
chr3L:4379501-4379596
Coord C2 exon
chr3L:4379421-4379500
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAG
5' ss Score
2.69
3' ss Seq
TTCATCTAGATATTTTACAGTTC
3' ss Score
2.85
Exon sequences
Seq C1 exon
AGTTGCCAGTTAGACAGTGAGCGCGTCGCATCTACGCACGCATCGAAAAGATTCAGCGGCAGCAGCAGCAGCGCGTTCAGTGGTTGTTGTTGTTGGAAACGGTGGAAGCACACACACACAGCAGACACAACACCAACACACGCCCGCACACACACACACACACCAACACGCGGCCAGCAAACACACTTTTCGGCTGGCCTTAATTTTCATTGCATACCAATGCCAATCACAATCAAAAATGGAATATTTGAAAATTTGAAAATTCGAATGGCAAAGTGAATTCAATTAAATTGTGCAAATTACGAGCTTGAGGATAATTGAAAAATCAAGGCACACACCTGCGCACATGTGTCTGTGAGAGGGTCCTGTGTGTACTGGTATCTGTGTGAGAACGCCTTTGGCTGTATGTGTGTTGAAGGCTAAGCAGAAAATCAGCAGCCCACGGAAAAGCCAACAA
Seq A exon
TTCTTGCCTGTTGCAGCCAAAGAGTTAGCAAACAAAGTGATAAAGACAAAGTGTTCAAGAAAAAATGTAATAAATACCCATTAAATATTATACAAG
Seq C2 exon
AAATCAACTTAATACTCAACCGATCAACTGGAAAAACTGAGCAATGTCAAGGCAAAGGTTCTCAACACGAGCAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0035538-6-6,6-5,6-4,6-3,6-1,6-0-4/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGAGAGGGTCCTGTGTG
R:
TCGTGTTGAGAACCTTTGCCT
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)