DmeALTA0005890-3/3 @ dm6
Alternative 3'ss
Gene
FBgn0086347 | Myo31DF
Description
The gene Myosin 31DF is referred to in FlyBase by the symbol DmelMyo31DF (CG7438, FBgn0086347). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 2L:10491814..10506779. Its molecular function is described by: phosphatidylinositol-4,5-bisphosphate binding; actin filament binding; microfilament motor activity; ATP binding; actin-dependent ATPase activity. It is involved in the biological process described with 6 unique terms, many of which group under: pattern specification process; cellular process; mesoderm development; actin filament-based movement; epithelium development. 48 alleles are reported. The phenotypes of these alleles manifest in: cell cluster organ; adult gut; adult tagma; gonad; epidermal cell. The phenotypic classes of alleles include: axis specification defective; some die during P-stage; increased mortality; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages.
Coordinates
chr2L:10505926-10506779:-
Coord C1 exon
chr2L:10506543-10506779
Coord A exon
chr2L:10506107-10506445
Coord C2 exon
chr2L:10505926-10506106
Length
339 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
3' ss Seq
TGCTCGATTCCAATTGGAAGCGT
3' ss Score
-0.41
Exon sequences
Seq C1 exon
CACAGTCCCTCTGCAACTTTCATTGAATGCGGTCGAGTGCGGTTGTGCGACGGCCGATTGTTGTTATTAATCCGCCGCAAACGAAACTGAATCCAGGTGGGCACTCACACCGATCTTCCGGACTATATTGCACCGACCTTAAATATATACACGTATATCAAAGACTGGAGAACCCAAAAACTAAATGTTTACAACGTGCGGCAAACGCGAAATTTGCGGTTTTCATTAAACAGTGAG
Seq A exon
CGTTCGATCGGTCCAGAAATCCAGAATTATTCTTTATTGATCGCTGTGACTGCGTGTTCGCCGAGAATTATTCGTCGTCATCAACAGAAGCGGCCCGAATTGGCTCATAAAACATAAAAATCGCTTGGCAGCAGCCACACGGAATATATATATATATACATATGTATAAATTTATTTATATTTGTACGCATATATAGTTAAAATTCGAGACGAGACGCGAAAGGCGAGGCAAACAAAACAAGCAAATAAAAACGTAACAAAACAAAAACGAAGTGAACAGCGTGTTTTTCGGGATACTCCTTTCGTTCTTACCTGAGTTTTCGACTCTCACCTTTGCAG
Seq C2 exon
CCGGCAATTAGCATCCCCCCCTTCGATCCCCGGAATACCGCACCCTCCGCTCGCGAGTTAAACTCTAATAAACGCAGGATCAAAAGGACACCATGGCTATGCAACGGGAAGCTGGAGTGCAGGACTTCGTCCTCCTCGACCAAGTGTCCATGGAGAAGTTCATGGATAACCTGAGAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0086347-1-2,1-1,1-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.1=70.0)
A:
NA
C2:
PF0006316=Myosin_head=PU(3.1=70.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0079625
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0293078
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGAATGCGGTCGAGTGC
R:
GAAGTCCTGCACTCCAGCTTC
Band lengths:
346-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)