DmeALTA0007171-2/2 @ dm6
Alternative 3'ss
Gene
FBgn0030503 | Tango2
Description
The gene Transport and Golgi organization 2 is referred to in FlyBase by the symbol DmelTango2 (CG11176, FBgn0030503). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (2 unique). Gene sequence location is X:13616989..13619207. Its molecular function is described by: . It is involved in the biological process described with: Golgi organization; protein secretion. 5 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages.
Coordinates
chrX:13617814-13618402:+
Coord C1 exon
chrX:13617814-13617936
Coord A exon
chrX:13618102-13618272
Coord C2 exon
chrX:13618273-13618402
Length
171 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
3' ss Seq
TTTCTGTTTTCTGTTTGAAGCGC
3' ss Score
8.71
Exon sequences
Seq C1 exon
GGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGGCGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTGACCGGCGAGCCCAAGCCACGCGATGCAGTTG
Seq A exon
CGCACAAAAACATTTTGCAACCGCATAATCACAACAGCAACAGCACCGGCATTAACCTTTGCCCCAAGACCACCACCTCCAACAGCTACCGTCATCCGAATCCGAATCCAATTCAGAACCCGAATACGAATCCGAGTAGGGGGCAATCGAATAACGAACATTTCTTACTAG
Seq C2 exon
GGCGCGGCATGATTGTGGCGGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACGAAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCCATCGAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0030503-8-6,8-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.359
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.8=100)
A:
NA
C2:
PF057427=NRDE=FE(15.5=100)
Main Inclusion Isoform:
FBpp0300867
Main Skipping Isoform:
FBpp0073638
Other Inclusion Isoforms:
FBpp0309341
Other Skipping Isoforms:
FBpp0304111
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGATCTGGAGCCGGGA
R:
TGGACACAAAGTTGAAGGCAGA
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)