DmeALTA0008954-2/3 @ dm6
Alternative 3'ss
Gene
FBgn0031681 | pgant5
Description
The gene Polypeptide N-Acetylgalactosaminyltransferase 5 is referred to in FlyBase by the symbol DmelPgant5 (CG31651, FBgn0031681). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2L:5072170..5093592. Its molecular function is described by: polypeptide N-acetylgalactosaminyltransferase activity. It is involved in the biological process described with: oligosaccharide biosynthetic process. 17 alleles are reported. The phenotypes of these alleles manifest in: embryonic/larval copper cell; embryonic/larval gut. The phenotypic classes of alleles include: viable; lethal; partially lethal - majority die. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during late pupal stages.
Coordinates
chr2L:5092875-5093592:-
Coord C1 exon
chr2L:5093445-5093592
Coord A exon
chr2L:5092899-5092901
Coord C2 exon
chr2L:5092875-5092898
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TCCCACATCCTTTCATCCAGCAG
3' ss Score
5.11
Exon sequences
Seq C1 exon
GGGCACTCTAAAAACCTGAAAAATCTATTTAAGCAACCCGCAACGCTCTCTTCTTCGTAATTTTTTGCTCCGATACGAGGATATGTCGCGTCGCGCATGAATTAATTATTAATCAAAAGAGAGTTAACAGTGCTTGTGCAGTGCAAGT
Seq A exon
CAG
Seq C2 exon
CTTCCAGAGAGATTTTCCCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0031681-0-3,0-2,0-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATACGAGGATATGTCGCG
R:
CCAAAGGGAAAATCTCTCTGGA
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)