DmeALTD0001170-1/2 @ dm6
Alternative 5'ss
Gene
FBgn0037486 | CG14605
Description
This gene is referred to in FlyBase by the symbol DmelCG14605 (FBgn0037486). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3R:7217679..7219705. Its molecular function is described by: carbohydrate:proton symporter activity. It is involved in the biological process described with: glucose import. 5 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected. Peak expression observed during late pupal stages, in adult male stages.
Coordinates
chr3R:7219358-7219635:-
Coord C1 exon
chr3R:7219535-7219635
Coord A exon
NA
Coord C2 exon
chr3R:7219358-7219475
Length
0 bp
Sequences
Splice sites
5' ss Seq
TACGTGGGT
5' ss Score
1.77
3' ss Seq
TACCTGATGATTTTTCCCAGTGT
3' ss Score
4.52
Exon sequences
Seq C1 exon
TTATAATATGAAGAATATAATGCTTTCTAGTGTTAGGCAACGATAGAATATGAAAATCTGTAGCAGACGCAACCGCTGGCAGTTGCTTTCCACCATGATAC
Seq A exon
NA
Seq C2 exon
TGTGCATTATGTCGTTGACTCATGGAATATCCCTAGGATGGTTCTCGCCCACTCTGCCCACTCTCATCTCCGACAACAGTCCAATTGGCCATCCAATTGACATCAGCGAGGTGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0037486-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008319=Sugar_tr=PU(1.5=16.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGTAGCAGACGCAACCG
R:
GGCGAGAACCATCCTAGGGAT
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)