DmeALTD0001538-10/13 @ dm6
Alternative 5'ss
Gene
FBgn0039830 | CG1746
Description
The gene ATP synthase, subunit C is referred to in FlyBase by the symbol DmelATPsynC (CG1746, FBgn0039830). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (2 unique). Gene sequence location is 3R:31216145..31219630. Its molecular function is described by: proton-transporting ATP synthase activity, rotational mechanism. It is involved in the biological process described with: ATP synthesis coupled proton transport; proton transmembrane transport. 22 alleles are reported. No phenotypic data is available. No phenotypic class data is available. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed during early larval stages, during late pupal stages, in stages of adults of both sexes.
Coordinates
chr3R:31218943-31219636:-
Coord C1 exon
chr3R:31219536-31219636
Coord A exon
chr3R:31219174-31219535
Coord C2 exon
chr3R:31218943-31219048
Length
362 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGA
5' ss Score
7.03
3' ss Seq
CTCCGTCTATATCTTTGCAGAGC
3' ss Score
9.78
Exon sequences
Seq C1 exon
TCGTCCTTTTTCCCAGCTCCCGCTGACGGCCACACTTAGCACCCCCCAAAAGTCAGCGAAATTGTCAAATTCGTTTTACTGTTGTGAAGGGTTCGTTCGAA
Seq A exon
GTGAGTTGCTTTTTCCGGGTTTTTCCGTCCGCTGGCGGAGCACCCCCCTTATCAGCACCCCTCTGTTGGGTAACAGCCGTGCAAACGCCTCAGATAGCCAAAAAACGCGGAATTAGTGAAGAATCGTGTGAAATTTCGCCAATTAAAGTGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATCGGCAAATTCGCAGAGGAAAAGCCAGCAAATCGGTTTCAATTGATGACTGAGCACAGATCGAGCTGAGAGTCGAGTGAAAATCCG
Seq C2 exon
AGCCGTGCGCTAGCTTCAATTTTGTCGTAAGCAAAACAAAAAGGAAATTCAACCGAAAATGTTCGTGTCGACAGTCTCTCGCATTGCCCCAGTTGCCAGGAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0039830-0-1,1-1,2-1,3-1,4-1,5-1,6-1,7-1,8-1,9-1,10-1,11-1,12-1-10/13
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTTTTCCCAGCTCCCG
R:
CTGGCAACTGGGGCAATGC
Band lengths:
198-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)