DmeALTD0001614-2/3 @ dm6
Alternative 5'ss
Gene
FBgn0030163 | CG1791
Description
This gene is referred to in FlyBase by the symbol DmelCG1791 (FBgn0030163). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is X:9963453..9964878. Its molecular function is described by: transmembrane receptor protein tyrosine kinase activator activity. It is involved in the biological process described with: negative regulation of apoptotic process. 4 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: lethal; viable; lethal - all die during embryonic stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected. Peak expression observed during late pupal stages.
Coordinates
chrX:9963725-9964462:-
Coord C1 exon
chrX:9964369-9964462
Coord A exon
chrX:9964366-9964368
Coord C2 exon
chrX:9963725-9964294
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
TGAACTTCTATAATTTTTAGACT
3' ss Score
6.77
Exon sequences
Seq C1 exon
ATGAGCTGCAAAATCTCAAAACAGAGCTTAATGAGCTACAGGGACTCATTGAGGAGTATAAAAATCAGGGCACCGGAATACCCATTGCAACCAG
Seq A exon
GTT
Seq C2 exon
ACTTCGCCCATTGCCAGCAAGTGTGCAGACCTTTCCGTTGGCGCTGGCCACGCCCCCCGACGATACGCCCCGAAATTGCTACGATGAGAAGCATGGTCAGGTGAGGATCCGAATTGCTCCGGATATGGAACCCTTCTTCGCGAGCTGTGACCAGAAAGTGAGAGATGGTGGCTGGATGGTGATCGCCTATAGATTCGATGGCAGCGAGGACTTCAACAAGGATTGGCAGAACTATAAGGCCGGTTTTGGCGCTTTAAACTCGGAGTTCTTTATCGGATTGGATAAGCTGCACAGGTTGACCAACAGTGAGCACCACGAGTTGCTCATCATAATGAAGAAGAAAAGTGGAGAGGAACGTTTCGCGCTGTACGATCACTTCAGTATTGGCAGTGAATCGGAAAAGTATCTTCTATATGTACTTGGTGCCTACAAAGGTGATGCTGGTGATTCGCTACGTTACCATGCGGGCAAGAAGTTCACCACATTCGATCAGGATAACG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0030163-2-3,3-3,4-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(79.4=89.0)
Main Inclusion Isoform:
FBpp0071364
Main Skipping Isoform:
FBpp0307847
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAATACCCATTGCAACC
R:
TAGCAATTTCGGGGCGTATCG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)