DmeALTD0001837-1/3 @ dm6
Alternative 5'ss
Gene
FBgn0023528 | CG2924
Description
This gene is referred to in FlyBase by the symbol DmelCG2924 (FBgn0023528). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is X:2264657..2270761. Its molecular function is described by: ubiquitin-protein transferase activity; ubiquitin conjugating enzyme activity. It is involved in the biological process described with: protein K48-linked ubiquitination; protein polyubiquitination. 9 alleles are reported. No phenotypic data is available. No phenotypic class data is available. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:2268938-2270799:-
Coord C1 exon
chrX:2270699-2270799
Coord A exon
NA
Coord C2 exon
chrX:2268938-2269704
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTTTAAAACTCCAATTACAGCTT
3' ss Score
4.37
Exon sequences
Seq C1 exon
CATCGATATGCCGATACACGCATAAACATCGGCGGACTGATTCATCGATGACCAACGTATCGCCATCCGTGGATCGCTAATTTGTTGTTGGTAAAAAAAAG
Seq A exon
NA
Seq C2 exon
CTTTAATGCCCAGCACAAACCAACAAACAAACAAACGCATCAACAGTATAAGAAAACGATAGTAAGTCGGGAAAATCAAAGTGCAAATCTGAACATAAAATAAGCAGAGTGCGAGCAAGACAGCGCATGCTGGGCGCCGCAGGAGCTGTAGAAGAAGAAGCAGTGAGAGTGAAGTTGACTGGAAGTGGAGTGGAAAAAGAAGAGCGAGAAGAGAGCCAGCGAAAACAACAAAGAACAACCAGTCGACTCCAAAAATTGCCCTTTCAATCTACCTCCAAACACGAGCAAAATCCTCATTCTAATAAAAAGCTCAATAACTAAATGAGTAAACATAATATTCACATAAAGACGCCCTGAAGAACAACTTAAAAACTAAAAAGGGTCATCTGGAGTGGGCAGATAAAAGCAGCTGACGGACAAAAAAAAAAAAAACATTTAATCCCATACCAGCTTTCTACGCCTGGAAGTCGCAAAGGTAGAGCTCAAGAGAGGGGGAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0023528-0-2,1-2,2-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.056
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0577317=RWD=PU(51.0=96.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGACCAACGTATCGCCAT
R:
TGCACTTTGATTTTCCCGACT
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)