DmeALTD0003474-2/6 @ dm6
Alternative 5'ss
Gene
FBgn0036179 | CG7368
Description
This gene is referred to in FlyBase by the symbol DmelCG7368 (FBgn0036179). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 3L:11597202..11605374. Its molecular function is described by: nucleic acid binding. It is involved in the biological process described with: regulation of gene expression; negative regulation of transcription by RNA polymerase II. 5 alleles are reported. The phenotype of these alleles manifest in: wing. The phenotypic classes of alleles include: visible; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of extremely low expression. Peak expression observed during early larval stages, during early pupal stages, in adult male stages.
Coordinates
chr3L:11601431-11603254:+
Coord C1 exon
chr3L:11601431-11601508
Coord A exon
chr3L:11601509-11601515
Coord C2 exon
chr3L:11602648-11603254
Length
7 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGG
5' ss Score
8.53
3' ss Seq
CTTCAAAACTCTCATTCCAGTAG
3' ss Score
3.84
Exon sequences
Seq C1 exon
CCACATGCCGCCAGGTGGCTCCGTTCGTGGATGCGGCGGGTGTTATTCGCATGTGCATGTGCATGTGCACCTCAGACG
Seq A exon
GTGAGCG
Seq C2 exon
TAGCCTGATTCTCCGCGCACAAGATCCCATTAAGTTCCCCTGGAATTCCCAGATTAGCTGAGTAACGAACGCACAATGAACTTCACCCCGTTTGGCAACACCTTTCCCGGAAACATACCCGGCCTGCCGCAATTCACGACGAGCACAGCTCCGCTGGTTTCCACCGTGACTGCCGCCGTGACGGATGTGACAGTGACGGGCACCAATAATCCGCAGCAGCAACAGCAGCAGGATGCAGCCGGCAGCAGCAATCGCTACCAGCAGCAGCAGCAACAGGTAACGCATTTTGGCCAGGCCACTATGACGGCGGGCCAGGGTAGCAGTGGCAACAAGTTCCGCGGCGGCCAGGACGATGCAATCCAGGGTGACAAGTACAATGGCCACTTGGTGGCTTCCTCCCAGCAGCAGCAGCAGCAACAACAACAACAGCAGACGCAATATGCAACTGTTGCGTATGCTAGTGCAACAGCGACGAGTGCTGCAACGGATGCCCTGCAGGC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0036179-2-1,3-1,4-1,5-1,6-1,7-1-2/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.781
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTCCGTTCGTGGATG
R:
TTAATGGGATCTTGTGCGCGG
Band lengths:
97-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)