DmeALTD0005362-2/2 @ dm6
Alternative 5'ss
Gene
FBgn0261800 | LanB1
Description
The gene LanB1 is referred to in FlyBase by the symbol DmelLanB1 (CG7123, FBgn0261800). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 2L:7811438..7820771. Its molecular function is unknown. It is involved in the biological process described with 14 unique terms, many of which group under: cellular process; extracellular matrix organization; basement membrane organization; cell adhesion; response to biotic stimulus. 26 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; Malpighian tubule; neuromuscular junction; adult circulatory system; stage 16 embryo. The phenotypic classes of alleles include: lethal - all die before end of first instar larval stage; neuroanatomy defective; visible; increased mortality during development.
Coordinates
chr2L:7814576-7817656:+
Coord C1 exon
chr2L:7814576-7814643
Coord A exon
chr2L:7814644-7814651
Coord C2 exon
chr2L:7814811-7817656
Length
8 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
CTAAAATGAATTTTTTTTAGATT
3' ss Score
6.43
Exon sequences
Seq C1 exon
CTACAGGACTAGTTGGAAAATGCCACAATGAATAAATAAATATTTTGATCAAAATAAGGAAGAGAGCC
Seq A exon
GTGGTTAA
Seq C2 exon
ATTTTCATACTGAGGATCACGTGGACAAGTGTAAGAGATCCCCTTAAAAAACGAACGAAAAGAAAAGCAACTGATTAAAGTCCCGGCCGGAAGTGCCCCAGTGGAACGCGACCCCAACAACTGAGAGCCACATCGAGATGTTGGAGCTGCGGCTTATCGTGGTCATTGTGCTCGCCCTGCTCAGCTGGCAGTGGGACCCAGTGGACTCCCAAAGACCGCCCCAGCATGGCCGACGTGATCGTCCGAAATATCCACCGAACAAGTTTATCAAGACTCATCCATGCGAGAGATCCTCCTGCTACCCGGCAACGGGTAATCTTCTGATCGGCCGAGAAAACCGCCTGACTGCCAGTTCCACGTGTGGTCTGCACTCGCCGGAGAGATTCTGCATCCTGTCCCATTTGCAGGATAAGAAGTGTTTCCTCTGCGACACGCGTGAGGAGACCAAGCATGATCCGTACAAAAATCATCGCATCGGACAGATTATATATAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261800-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.029
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=WD(100=25.8),PF0005319=Laminin_EGF=WD(100=7.2),PF0005319=Laminin_EGF=WD(100=6.8),PF0005319=Laminin_EGF=WD(100=6.4),PF0005319=Laminin_EGF=WD(100=5.4),PF0005319=Laminin_EGF=WD(100=5.0),PF0005319=Laminin_EGF=WD(100=5.1),PF0005319=Laminin_EGF=WD(100=5.0),PF0005319=Laminin_EGF=PU(41.7=2.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTAGTTGGAAAATGCCACA
R:
CACTTGTCCACGTGATCCTCA
Band lengths:
95-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)