DmeALTD0007237-3/3 @ dm6
Alternative 5'ss
Gene
FBgn0037299 | Vps37B
Description
The gene Vacuolar protein sorting 37B is referred to in FlyBase by the symbol DmelVps37B (CG1115, FBgn0037299). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 3R:5226158..5227526. Its molecular function is described by: . It is involved in the biological process described with: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; protein targeting to vacuole; protein targeting to membrane; endosome transport via multivesicular body sorting pathway. 8 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 hour embryonic stages, during early pupal stages.
Coordinates
chr3R:5226878-5227526:+
Coord C1 exon
chr3R:5226878-5226978
Coord A exon
chr3R:5226979-5226995
Coord C2 exon
chr3R:5227324-5227526
Length
17 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTTATTGTTTAAAATTTCAGAAT
3' ss Score
6.82
Exon sequences
Seq C1 exon
CCTGATGCCCATGCCACCGCCATCCAGACCGTACTGAGGTCTTGGTCCTTGGTCCTTGGTCCTCAGCGAATTAACTGCCATGGCGCATCAGTCTGCAGCAG
Seq A exon
GCAAGTTTGTACATTTG
Seq C2 exon
AATCCTCTCTTTAAGTACATATTGCTTCAGTTTCATCTTCTGATTACAGTGGGTTAATTGCAAATCAGAGGGAACTTTCTGGTACACACATCTCTGCCTGCACTAAACTATGATATATATGTATATGTGAAAGTATAAATTAAGCGAAAATTAACATTAATATTAGACAGTGGACATTTCTTGTTAAAATAAAAACTTTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0037299-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF072008=Mod_r=WD(100=68.8)
A:
NA
C2:
NA
Main Inclusion Isoform:
FBpp0293539
Main Skipping Isoform:
FBpp0078424
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0293538
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAACTGCCATGGCGCATCA
R:
CCAGAAAGTTCCCTCTGATTTGC
Band lengths:
114-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)