DmeALTD0008206-2/5 @ dm6
Alternative 5'ss
Gene
FBgn0028370 | kek3
Description
The gene kekkon 3 is referred to in FlyBase by the symbol Dmelkek3 (CG4192, FBgn0028370). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 2L:15552723..15583978. Its molecular function is unknown. The biological processes in which it is involved are not known. 11 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of no expression detected. Peak expression observed within 12-24 hour embryonic stages, during early larval stages, at stages throughout the pupal period, in adult male stages.
Coordinates
chr2L:15552709-15555030:+
Coord C1 exon
chr2L:15552709-15552809
Coord A exon
chr2L:15552810-15552814
Coord C2 exon
chr2L:15554510-15555030
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCA
5' ss Score
1.44
3' ss Seq
TTGTTCTTCCTCATCGTTAGCCA
3' ss Score
3.55
Exon sequences
Seq C1 exon
CGTTGCCCAAAGTCAGTTTACTCGGGAGCGCGGCGGAGTTCGTTTAGCAGCGGGCCAACGGTGCGGATACTTGACTTGGGCCAGAGCTGCCAACTGAATGT
Seq A exon
GTGAG
Seq C2 exon
CCAAATACCCATAAACAATTCATCAAAAAGGGAGCAAGCAAACGAAAATAAACAACAGATATTGTTTACAATTGCCTAAAATGGCAAGAGACAACCAAATAAAATAGTTTGCAAATTCATTCCATGACAAGTGTCTAAAACAATAAGCACAAAACGTTTTATAACTCCCTCTCTCTCTATCTCAAAATACAAACAATGAACGGCAACGGCACCAACACCAAGTGCAGCAGCAGCAGCAACAACACGGCGGCAACATCAACATCGTCAGCAGCAGCAGGTTCAGTCAGTCGGTCATCAACGAAAACAACAATGCTGGCTACAACTATGTTCTATGGCTAATACAAAAGCTACAAACAACAAATCGCCAACAACAACTAAGCCAAAAGTTCGCCAAAGCATTTGATGCTAAAAAAACAACAAGAAAACCTACACAAACAGCAGCGCAGCAGCCACATCAACATTGGCAACACTTTTACGAGTTGCAAACTACCTTGTACAAC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0028370-0-1,1-1,2-1,3-1,4-1-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGCGGATACTTGACTTG
R:
TTTTCGTTTGCTTGCTCCCTT
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)