DmeALTD0008326-1/2 @ dm6
Alternative 5'ss
Gene
FBgn0265276 | l(3)neo38
Description
The gene lethal (3) neo38 is referred to in FlyBase by the symbol Dmell(3)neo38 (CG6930, FBgn0265276). It is a protein_coding_gene from Dmel. It has 11 annotated transcripts and 11 polypeptides (6 unique). Gene sequence location is 3R:11765038..11779128. Its molecular function is described by: transcription regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with: regulation of chromatin silencing; positive regulation of transcription by RNA polymerase II. 33 alleles are reported. The phenotypes of these alleles manifest in: chaeta; mesothoracic tergum; wing. The phenotypic classes of alleles include: visible; lethal; viable; flight defective; partially lethal - majority die; pain response defective.
Coordinates
chr3R:11777474-11779082:-
Coord C1 exon
chr3R:11778982-11779082
Coord A exon
NA
Coord C2 exon
chr3R:11777474-11778621
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGG
5' ss Score
6.17
3' ss Seq
ATTAAACGATCAACTTATAGGTA
3' ss Score
5.43
Exon sequences
Seq C1 exon
CATGAATATTCTGCCCAGCAATCTGGCCAAGTGACCAAGCCAATTTCGGGAGCAGGGGCCTGGGACCAGTGTCATATGCCCGACACTCGGTGCAGCGAAAT
Seq A exon
NA
Seq C2 exon
GTAAAATACCCATCTAAACTACCGATAAAGGTAACCATGAGAGATTGGATGAAAACGAGTGCCATTAGCCCTCTAACGAAATATAAAAACTAAAAACCATCTAAACCATAAGCGAGGAAAAGGGGTGCGAATACCTCCCAACCGATATACCCAGCGTGCCTCTGGGCACTGTCACTGTCATTTGCGTCGCAGCGCTGCCGCCGTCCGCGTCCGCGTCGCTTTGCCTGGCCCAGTGTTTCCGCTTTCTTTCGCCTCGTTGTAATGTTACTTTTAGTTTGATGTCGGAGCCTCGACGAGCCGGTCGTAAGCGAAATCGTAAGCGAGACTTTAGTGCGATTCCGCTCCGTTCCGCCGGTTGTGTGTGCGTGCTTAGTTCGAGCTGAGGCGAAGCAGAAGCAGAATCGGAATCAGAATCCAGCGGAATCGAGAATCAAAATCGAAACCGAAAGTGGTTCTCCGCGTGTGCGAGCTAGTGTGTGTGTGTGTGTACGTGTTGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0265276-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.536
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAAGCCAATTTCGGGAG
R:
CGCAAATGACAGTGACAGTGC
Band lengths:
256-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)