DmeALTD0008633-1/3 @ dm6
Alternative 5'ss
Gene
FBgn0261710 | nocte
Description
The gene no circadian temperature entrainment is referred to in FlyBase by the symbol Dmel
octe (CG17255, FBgn0261710). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (2 unique). Gene sequence location is X:10461865..10474675. Its molecular function is described by: . It is involved in the biological process described with: temperature compensation of the circadian clock; entrainment of circadian clock. 12 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: locomotor rhythm defective; lethal; uncoordinated.
Coordinates
chrX:10471880-10473286:-
Coord C1 exon
chrX:10473238-10473286
Coord A exon
NA
Coord C2 exon
chrX:10471880-10472143
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTC
5' ss Score
1.06
3' ss Seq
TACGCTTTTGTATTTTGCAGCCC
3' ss Score
9.99
Exon sequences
Seq C1 exon
CCACTGTGCCATGCAAAATTAATAAAAGGATACGGCTGTAAAACAAAAG
Seq A exon
NA
Seq C2 exon
CCCACCAGAAAGACTGAAACAAGGAGCTTCGGCCCAAAAGCGATCCCAGCTCCTTAAACTCATTCTCGTCAAGAACCACAGCCACATCCTAGCCCATCCTCCAGCGCAGCGGGAAGACGAGGAGCGCGGCGGTGGCGAGAAGGAAGCTAACGCTAATGAGGATCTATTGGCAGCATGAGTACACTGGGGGGAAGTAGGGGAGAGCGAAATGCCAAGCCCAAATTCACAGCGTTAGATATAAATCGCATGTACAAGAATAGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261710-5-2,6-2,7-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF070016=BAT2_N=PU(16.3=96.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGTGCCATGCAAAATTA
R:
AAGGAGCTGGGATCGCTTTTG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)