DmeALTD0008972-1/5 @ dm6
Alternative 5'ss
Gene
FBgn0035106 | rno
Description
The gene rhinoceros is referred to in FlyBase by the symbol Dmel
no (CG7036, FBgn0035106). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 3L:187207..199762. Its molecular function is unknown. It is involved in the biological process described with: compound eye photoreceptor development; negative regulation of epidermal growth factor receptor signaling pathway. 16 alleles are reported. The phenotypes of these alleles manifest in: chaeta; cellular anatomical entity; photoreceptor cell R8; pigment cell; mesothoracic tergum. The phenotypic classes of alleles include: increased cell number; decreased cell death; visible; viable; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages.
Coordinates
chr3L:198762-199779:-
Coord C1 exon
chr3L:199679-199779
Coord A exon
NA
Coord C2 exon
chr3L:198762-199087
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TATGCCTTCTCTCCCACCAGACT
3' ss Score
10.34
Exon sequences
Seq C1 exon
GTTCATCATGGCGATCTGAGAAAAATAATTTTTGCTCAAAAATAAAATAAATAATCAAAAGAATTGTAATTCCTGCGAACGCAAATGCGATTTTGGGAAAC
Seq A exon
NA
Seq C2 exon
ACTAGCGAATGCTCGTCGAGAATCCAAACCAGTGAGCCAAACGCCAAAGAAAAACTTGCAAAAGTCTGTGGATAAACAACGAACAATAACAAAAGGCAGCAAGCGGAAGGTGGCAGTGGAAGTGGACTAACTCGCCCGTGGAGAAGTGCGGAGCACACAGGACTGCAAAGTGGCGTCGCTACTGGATATTAGGGCTGGGGCAGCAGCGGCGTCCATGTCCACGGGGCACAAAGGGTGGACCACCAAGAATCACGACCGCACCACATCCAGGAGAGCGCAGCAGCAGCAGCCGGTGTGGTGTCGCCAACTGTGGCCTTAAGCATGTA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0035106-0-0,1-0,2-0,3-0,4-0-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGTAATTCCTGCGAACGCA
R:
TCCGCTTGCTGCCTTTTGTTA
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)