DmeALTD0009353-2/3 @ dm6
Alternative 5'ss
Gene
FBgn0086899 | tlk
Description
NA
Coordinates
chrX:3720004-3721647:+
Coord C1 exon
chrX:3720004-3720104
Coord A exon
chrX:3720105-3720322
Coord C2 exon
chrX:3721376-3721647
Length
218 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
3' ss Seq
TTATTTATTAATTTTTTCAGATG
3' ss Score
8.73
Exon sequences
Seq C1 exon
AGTATATTTTTAGGCCATTTCTGCGTGTGTGCGTTCGTGTGAATATTGTGAATATTTTTTTTACTGTGAAAATAGACAAAAATCGGCTGTGGAAAACCGAA
Seq A exon
GTAAACACATTTGGGAATCATGGCGATTGGCCCTTAACCTTAACCCTTAAGTGTCGTGCCGACAGTGCCACGCCACAAACCCAAATCCCAAAGAAACAAAAGCGAAAGAAAAAAAAAAAAGAACAACAAAAAGCTATAGTTGCAGCCTCTGAAAGTTTAAGACAATCGCCGATCCGATCGGAAGCGGAAGATATATGCTCGCCACACCAAATGGCATG
Seq C2 exon
ATGAATTTGTCACTTTATTATTGCCATGGCTCTGACAAATCTTGTCGCACTCGTTGCCGACATTTGCAATCGATCAATATTAAAATATTGAATAACTAAACCAACCACGAGCTAAAAGAAAAATTTCAGAAAAACTTTTGTATCTGAATCGAAAACAAAAAAAAAAACAAATTCCTATCGGCGCTTATAATCACAAAGTAATGGATCAATTTCAAACTTCACTAAATCCGCGGAAACTCGAGCTTCTGGAGTCTCGAATTACTGGAGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0086899-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.817
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGGCTGTGGAAAACCGAA
R:
CCGCACTCCAGTAATTCGAGAC
Band lengths:
293-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)