DmeEX0000314 @ dm6
Exon Skipping
Gene
FBgn0261647 | Axud1
Description
The gene AXIN1 up-regulated 1 is referred to in FlyBase by the symbol DmelAxud1 (CG4272, FBgn0261647). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is 2L:2365345..2370137. Its molecular function is described by: sequence-specific DNA binding. It is involved in the biological process described with: negative regulation of cell population proliferation; positive regulation of transcription by RNA polymerase II. 8 alleles are reported. The phenotypes of these alleles manifest in: eo-type sensillum; eye disc; wing cell; larva; imaginal disc. The phenotypic classes of alleles include: phenotype; visible; cell cycle defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chr2L:2365345-2368213:+
Coord C1 exon
chr2L:2365345-2365728
Coord A exon
chr2L:2365809-2365901
Coord C2 exon
chr2L:2366275-2368213
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCGGGTGGTCTCCTTTCTAGCGT
3' ss Score
6.91
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
TTGTCATGTTGCAGGGGTCCAGCGACGGGCACACTGAATAGAAGAAGTAATAACATTGCGAGAAAAGAAGAAGTGAAAAATTAAGAAAAAGTTTACGGAAGTGCGAAATGAGTTTTAAAAAATAAATCATAATTTTGGGCGTTGCCAGGCGCATAGTAAAGTGATTGTGTTAATAAAAGAATACCGACCTTTGTGTCCTGATTCGCCTCCTTCACGCACACACTCGCACAGACTTGCACAAACACACGCACACAGTTGCGTCTTTCGTCATCTCTCTCGCTCTCAGTTTTTTATCGCAGCTGCAACGCAAATTGCAAAAAGGATAAATCCCACCGATCTTGCGAGTCCGGCCGTTGGCTTGGCTGCGAAAATATAAGCGCAAAG
Seq A exon
CGTGCGAAATTCTCGGGGATCCAGGATTTCAAAGGATTCTGCACACGCACACCCATCCAAGCACAGTGCTCATTCGAAAAAGCGAACATACAA
Seq C2 exon
ATGACCAAAGGACACTCAATGATCTAGGGACCTCGACACGGATAGCATGTTTAGTCCTATAAAAAAAATATTTACGTACATACAAAAAAATGCGAGCGGCTCCAATATGTTTAGCCCATCAGGAAACAAGGCCGCCGGCCAAAGGGAGGGGACCACCAGCCTAACTGCCCACGACGAAGGCGAAAGGAAGGATCAGCGGCATCTGGATCACAAGGATAATCAGAGCGAACCGGAGGAGCGGCAGCATCAGCTGCAAATATTTCCCCACCTGGACGATGACGACGACGACATCGAGAGGCAGATCAAAACCTCCATAATTGACGCCAGCAAGGTGCACGCAGCGAAAGCCAAGGCGTTGGCTTCCCTACCCATGCCGCTTGAGCAGCTCGATGATGAACTGGCGGACTTTGCTCACGGCCCGGCGGACACCGAACTAGAGGAGCAGTTCCTTGAGCTGGAGAACTATCCTAATAATGAGATAATCGTACTAGGCGATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261647-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.566
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCCACCGATCTTGCGAG
R:
TATTGGAGCCGCTCGCATTTT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)