DmeEX0000441 @ dm6
Exon Skipping
Gene
FBgn0033983 | CG10253
Description
The gene Alkyldihydroxyacetonephosphate synthase is referred to in FlyBase by the symbol DmelADPS (CG10253, FBgn0033983). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is 2R:14929703..14934861. Its molecular function is described by: oxidoreductase activity; alkylglycerone-phosphate synthase activity; FAD binding. It is involved in the biological process described with: oxidation-reduction process; ether lipid biosynthetic process; lipid biosynthetic process. 6 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 06-18 hour embryonic stages.
Coordinates
chr2R:14932855-14934861:-
Coord C1 exon
chr2R:14934801-14934861
Coord A exon
chr2R:14933231-14933325
Coord C2 exon
chr2R:14932855-14933003
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCGTTCTCTCTCTCCGTCAGTTG
3' ss Score
8.94
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
AGTTATGGTTTTAAAGTTGTCCGCTGCAGTTGGTTCCGTATCCGAATCGAAATCGGTCGAT
Seq A exon
TTGTCTCGTTATTCCGATTTCCGTGCAGTTGAGGAAACGAAAGCCAAGTGCGCGCAACATAGGCCGCATAAATTTCTAGTGCAATTTCTATTTAG
Seq C2 exon
TCAAGTGCACAAATCGGCGAAATAATGGCAGCCAAGCGGAATGCGGTGACCACGGAAGCTCCGGAATCGTCGGCGCCCGGCGAAGGTACCGCCCTCGCCCTCGACTCCCGCCTGTCCAAGCGCGTGGAGAGCGTCATCCCCAAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0033983_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0086558
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0292773
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGGTTCCGTATCCGAA
R:
CTTCTTGGGGATGACGCTCTC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)