DmeEX0000939 @ dm6
Exon Skipping
Gene
FBgn0029893 | CG14442
Description
This gene is referred to in FlyBase by the symbol DmelCG14442 (FBgn0029893). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (5 unique). Gene sequence location is X:6689296..6695007. Its molecular function is unknown. The biological processes in which it is involved are not known. 8 alleles are reported. The phenotype of these alleles manifest in: mesothoracic tergum. The phenotypic classes of alleles include: flight defective; pain response defective; fertile; visible; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:6691682-6695001:-
Coord C1 exon
chrX:6692403-6695001
Coord A exon
chrX:6692073-6692113
Coord C2 exon
chrX:6691682-6692018
Length
41 bp
Sequences
Splice sites
3' ss Seq
ACAATAAATGATTTTTACAGTTG
3' ss Score
4.57
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
CCAATTGTACTAACGAACACACTATCAATCTAAACCAGGCGACCACCACAGCGACGACGACGACAACGGACGAGGCAGGCACCCCGCAGCCCGCGGAGGATCAGCAGCATCTGGTGACAGCAGCCGCCTATCAGCAACACCAGGCCCTGGCCGGAGTGGAGTATATGGGACAGGGCATGTTTCTGGCGCCCGGCTCCCTACGTCCACCCATGCAACTGAAGCAGGAGCCACAGACGCCGCAGCAGCAGCAGATTACACAGCAGCAGCTGCAGCAGCAGCATCAGCGATACACCATCACCGGACAGCAGCAGCAACAGGTTACGGCTGCTCTGCTCGAGGGCACCGAGCCGGGCAGCATCTTTGTGCAGCAGATCTATGGCGATGAGGGTGGCAAGGGCACCGCAAAGCTGCTCCAGGCCCATGTGCCGCACTTCAGCATCGCCGGTGGCCAGCTGGAACTCTACCCGCACAAATATGCTGCCAAGAAGCAGGAACTTCAG
Seq A exon
TTGCAGAGGAATTTGGAATCGAATACAAATTCGTAGCGCTG
Seq C2 exon
TTGGCGAAATCAACTGCCTCAAAGGAAAATGCTTGAAACCGGAAAGTAGGAATTTTGAAAATATATAGAATTCAATGGAAATTGGCAGAAGAAGCGGCCAATGGACCTCTCTTTTTTTTTGCGCGTTGCCTTACCCGCATTTTAACTCCTCTTTTGATCAAAAGCGAAAATCGTATAAGTTTATTTCAGTTAACATTATTGTTCGTTGTTCATATTACTTGTGTTAGTTCTTTTTTTTGGTCAGAAGCAAATGAATTAATCAATCGTATAGAGTGTAGATATATGTAGCAATGTAAATCTTGAACCTAAGAACAAAATACTTTTACCAACCAGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0029893-'3-4,'3-3,4-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
FBpp0308576
Main Skipping Isoform:
FBpp0070948
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACAAATATGCTGCCAAG
R:
GCCGCTTCTTCTGCCAATTTC
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)