DmeEX0002155 @ dm6
Exon Skipping
Gene
FBgn0034800 | CG3788
Description
This gene is referred to in FlyBase by the symbol DmelCG3788 (FBgn0034800). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 2R:22932035..22934077. Its molecular function is described by: uridine phosphorylase activity. It is involved in the biological process described with: nucleotide catabolic process; nucleoside metabolic process. 5 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed in adult male stages.
Coordinates
chr2R:22933119-22934077:-
Coord C1 exon
chr2R:22933601-22934077
Coord A exon
chr2R:22933384-22933508
Coord C2 exon
chr2R:22933119-22933318
Length
125 bp
Sequences
Splice sites
3' ss Seq
TAAATTCAAACTTTAAATAGACA
3' ss Score
3.57
5' ss Seq
AGGGTGACT
5' ss Score
2.76
Exon sequences
Seq C1 exon
AGAGAGAGCGGTCCCGGGGTGGGGTGGCAACTTCAACTTTGCCGGCTGCACTTGGCAACAAGTCTGCAAGCGACTGCGACTCCAATTGAGGGTCAAGGTCAGCGCTCGCGCATCAGCTGCTGCGCATGTGTGACGACCACGACGGCGGCCGTGACGCGACGGTGGCTTCGCGAAAGCTGCGCTCCGAGTTTCTGGAGCCGCATGCGGATGGGCAAGAAGCAGAGAGCGGTTGGCAAGCCGGTTTGGTCACTTTTTGCGCTTCTCCATACTTAAGTGCGGTGCGATCGCGGGTCGTCCAAGTAATCGCCGCATTTAGTTAGGCCTACGAGGGGCGCTATTAAAGTACTGCGCAGCTTACACTCATCTGCAAATGTTTGGTGACCATATGTACGGGTGAAGATACAAATGTAACTCAAATTTAGGCATACTAAATGATTTTGGAAACTTATGTCCTTTAAGTCCACTTTTGTAATAAAG
Seq A exon
ACACTCATTCCGGAAGTAAGACAAAATTGCTGGAAGTAACTTAAAAATTAAAAAAACAAAAATGTCCAAAAGCAACTGCAGTGACTGCACATGCCGTTTGGCCAACGAGGTGGGCCAGCTAAAGG
Seq C2 exon
CCATCGTGAATGCCCAGAGCAGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGACGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGTGCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACGGACTTTCCCAAGGTTTTTGGTGATGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0034800_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Inclusion Isoform:
FBpp0292517
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0071904
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCTTACACTCATCTGCA
R:
GCACTTCAGGCAGGGATTCAG
Band lengths:
251-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)