DmeEX0002734 @ dm6
Exon Skipping
Gene
FBgn0267431 | CG45784
Description
The gene Myosin 81F is referred to in FlyBase by the symbol DmelMyo81F (CG45784, FBgn0267431). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3R:567076..2532932. Its molecular function is described by: actin-dependent ATPase activity; ATP binding; microfilament motor activity; actin filament binding. It is involved in the biological process described with: actin filament organization; signal transduction; sensory organ development; vesicle transport along actin filament; sensory perception of sound. 6 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable.
Coordinates
chr3R:2413805-2503907:+
Coord C1 exon
chr3R:2413805-2414131
Coord A exon
chr3R:2461182-2461592
Coord C2 exon
chr3R:2503677-2503907
Length
411 bp
Sequences
Splice sites
3' ss Seq
AACCATTTATTTATTTCTAGAAA
3' ss Score
6.58
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TGTTTTTTCAGAACCCAAGGGACAAGGCGTCGTCAGTGGACACCAAGCAGAGAAGAAATTTTATGTACTACAAATCGTAGACCATGCTACTCGAAATTTTATTTTATGGATGGGCAATATTACTCAATAGAGTTTCAACCAAGCTCCACAGCAAACGACGTATTAGAGATAATAAAGAAAAAGATCGGACTTTTAGATAATGCAAAGGGATATTCCATTTATGAAGTAATAGGAAACTCTGAAAGAAGTCTTTCATCGGAGGAAAAAGTATGCGATGTTATGGCTAAATGGGAGAAGTATCAAATAACATCACAGCAAGGATTCCAG
Seq A exon
AAAAATACAACATTAATTTCACAGCAGAATCAATATATGTTCCTATTCAAAAAACATTTATTTTTCGACAATTATATTAATTTAGAGGATATTGTTGAAAAGGAACTATTATACCATCAAATTCTGCATAACCTTAGAAGTGAAAGATATCCAATAACTGAAATGGAAGCGATTATGCTAACTGCTCTTCAGAGCCAACTTGAGCGTGGTGACTGCTGTGAATCAATAACTGATTACAGGGCTGTCGCTAGTCATTGCTTACCACCAAGATTTGTACCAAATATACCACATGAAGCTGTAGCAATGCATCATCAAAGCCTTAGAGGAATGTTACCCATAGAGGCTAAAAAAGCTTTTCTAAATTTAATAAAAAGCTGGCCTCTTCATCGAGCGACTATTTTTGATGTTATG
Seq C2 exon
CAAAGTTTTACAACAAATTGGCCTCGAACGCTTTGGCTAGCAATCGATCAAAAAGGTATTCACCTACTGGAACATCGTTCAAGAAATGTTTTATGTACCTACGGATACGATTCTATTATATCTTTTTCTCCAAACTTGAATTCATTAATGATATTTACTGGAACGGAAAAAAAACAATCTAAGGTGATTTTAACCACACCGCAGGTAAGAAACTATTTATCATTTCGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0267431_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(19.8=21.1),PF0078818=RA=PU(88.2=75.2)
A:
PF0078818=RA=PD(9.7=6.6),PF0037313=FERM_M=WD(100=81.0)
C2:
NO
Main Inclusion Isoform:
FBpp0312365
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGACACCAAGCAGAGA
R:
TCGATTGCTAGCCAAAGCGTT
Band lengths:
342-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)