DmeEX0003314 @ dm6
Exon Skipping
Gene
FBgn0030617 | CG9095
Description
This gene is referred to in FlyBase by the symbol DmelCG9095 (FBgn0030617). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (4 unique). Gene sequence location is X:15139937..15163225. Its molecular function is described by: carbohydrate binding. The biological processes in which it is involved are not known. 11 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; fertile. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 12-18 embryonic stages.
Coordinates
chrX:15141897-15144731:-
Coord C1 exon
chrX:15144251-15144731
Coord A exon
chrX:15142724-15143281
Coord C2 exon
chrX:15141897-15141998
Length
558 bp
Sequences
Splice sites
3' ss Seq
TTGGCAAAACCATTCGTCAGCAC
3' ss Score
-3.89
5' ss Seq
TATGTAGAG
5' ss Score
-8.66
Exon sequences
Seq C1 exon
CTGAATCCGAAGAGGAAATCAATGTGCCTCCAGTGCCTGGCACCGTTCGCGAGGAGTTCCCACCACGACGCACAGTTCGTCCAGTGCTCATACCGAAGAAGCCGAACAGCACACCGGCTGCCCTGCCGCCCACCACCCATCAGGTGCCACCGCAACCACCGTCCACCTACGCACCCACACCACCGCGCAGCTCGCGACCAAGTGGTGCTCCGAATAGCGCCGGCGAAGTGGAGACAACCACGCGGAATACACAGCAGATCATCGCCAATTCGCATCCGCAAGACAACGAGATCCCCGACAGTGTCAACATCCAGCAGAACCAGTCGCCCAATGTCAACGTGCCCTTCGCCGTCGATAATCCCGACCGCAAGGAGACCAAGGAGGCCAAACTTAATCTGGGCGCCATCGTTGCTCTGGGCGCTTTTGGTGGTTTCGTCTTCCTGGCCGCCGTCATCACAACGATCGTGATCCTTGTGCGAAG
Seq A exon
CACCCCGAACAGCCAACGGCGGCACCTAGCCAAACACTTAACCGCTTACCAACATCATCATGCTCATCATCACCACCACCAGCAGATCCAGCAGCAATTCCACCACCGCAACCAGCAGCAGCAGCAGCAGGAGCAGCACCACCAGAACCACACACGCCAGCAGCAACAGAAGTACCACCAACAACAGGAGCAACTGCATCAGAGCCACCGCCAAAAGAAGCAGCCATCGCAATCGAAGAAAGGCCAGGGGGGAATCGGAATTGGGATCGGGATCGGGATACCGCGACCGAGTCGATTGCCCAGCTATGCCACGGCGACGGCCACCAGTGCCACCAGCTACGCATCCACCGCCCAATTAACCCAGAGTCACCTCTTTCCCGACGGCGGTGGCTATGGGAGCGTGGGATCGAGCAGTGCTGGTGGTCTGGTCCATGCGCCATCCATGTGGTACAGCGTACTGGCACTGCCCTTCGATGATCAGAAGCTGGGTCGCCGGGAGTTCAGCAGCTATGGACGCGGATATCGTGCCCGGGCTGGACTCTTCAGCAACTCCCATAT
Seq C2 exon
AAACCGAACCACACAACACTATCGCCATCGCGCCTCGCCCGACTGCAACACTGTGGCCAGCTTCGATAGCTCCACCTCCGGATCCCGCAATGGACTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0030617_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=0.727 C2=0.771
Domain overlap (PFAM):
C1:
PF0253517=Zip=PU(41.2=41.0),PF041569=IncA=PU(27.7=19.3)
A:
PF0253517=Zip=PD(58.1=49.7),PF041569=IncA=PD(71.4=42.8)
C2:
NO
Main Inclusion Isoform:
FBpp0111897
Main Skipping Isoform:
FBpp0303428
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0073843, FBpp0309356
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACCACGCGGAATACAC
R:
CTGTTGAGTCCATTGCGGGAT
Band lengths:
352-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)