DmeEX0003622 @ dm6
Exon Skipping
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11166027-11175291:-
Coord C1 exon
chr2L:11175161-11175291
Coord A exon
chr2L:11166690-11167312
Coord C2 exon
chr2L:11166027-11166143
Length
623 bp
Sequences
Splice sites
3' ss Seq
TAACGGTGTTTTTATGTCAGTGT
3' ss Score
5.42
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
ATGAAACTAAACTAAGCCAAACGTCTTTAAATTGATCCCAGAAGCCAGAAGGATTCGCGGCTTATAGCTCAGCTCCATCGAGGAGCCCACTGCAGCACTTTTGTACGCCGTGAGAATTGCGGAACCAACAG
Seq A exon
TGTCAAAATCGAACACCGTCTGACCCGATGGTTAAAATAGTTAAGCAAAGTATATTGCCAATGTCAGTGTTAATCATACAACAAAGTGCAACAATAAAGCTCTCAAAATCCTGCCAAATGAACGAAGTTAAAAGTTTAATATTCAATAGAAATTTTGTATATGCCTGATTACTCGAATCGTAGCGCTTTTATAGTCTTTTTACAAGCCCAAAACCAGTTGGTTTCATAAAGTGTTAAGTGTAGTTGTAACCAACTAAACCAGCCAACTCCAAACTCACCGAAACCGTATAGGAATAAAAGTAATCGTGGAATACGGATACGTAATCATTGCCAGCTCAACGCCTTGCCAGCCACCGTCACCATCACGTTCATTTCCACCACCACCAACTTCATCAGCATCGCACCATCTGGTGGTGCTGGTGGTGCTGTTGTCCTCGCACAGGATCGTCGGAAACATCGCCAAGATATCTTCGTTCGAGGAAGACTACCGGGCTGACAGGCCCATGGTGCAGCGCGCCTCTTCCTCGGATGCACCCTCCGTTCAGGGTGGCCAACATCGAGAGTCTCGATTTGGCCTTGGATACCCCTCCTACCAGAGTGGATACAACAAACTATTCACACAG
Seq C2 exon
GGTTCTGCCGACTCGAACTACTCACAACCGTCATCCGATCTGTCGCTAGACGAGGAAAAGGAATCGCTTCGGCGAGAAAAGGAACGTCAGGCCTTAAGCCAGTTGGATAAAGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.650 C2=0.888
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF120523=VGCC_beta4Aa_N=PU(92.7=97.4)
Main Inclusion Isoform:
FBpp0301962
Main Skipping Isoform:
FBpp0289392
Other Inclusion Isoforms:
FBpp0301964, FBpp0310211, FBpp0310212
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACTAAACTAAGCCAAACGTCT
R:
CCTCGCTTTATCCAACTGGCT
Band lengths:
247-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)