DmeEX0005929 @ dm6
Exon Skipping
Gene
FBgn0015791 | Rab14
Description
The gene Rab14 is referred to in FlyBase by the symbol DmelRab14 (CG4212, FBgn0015791). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 2L:14355145..14358764. Its molecular function is described by: GTP binding; GTPase activity. It is involved in the biological process described with 9 unique terms, many of which group under: intracellular transport; response to external stimulus; inorganic ion homeostasis; cell communication; peptide transport. 15 alleles are reported. The phenotypes of these alleles manifest in: phagocytic vesicle; hemocyte. The phenotypic classes of alleles include: fertile; wild-type; flight defective; immune response defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed in adult male stages.
Coordinates
chr2L:14355145-14357454:+
Coord C1 exon
chr2L:14355145-14355473
Coord A exon
chr2L:14356977-14357103
Coord C2 exon
chr2L:14357341-14357454
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTGGCTTCAGTTG
3' ss Score
8.66
5' ss Seq
TCGGTTTGT
5' ss Score
3.55
Exon sequences
Seq C1 exon
TCAGTGTGACCGCAGGAAACCAAGCAAAACAAGAGAACGCAAAAGCAGTGAAAAAAGACTACTGATTTGCATCGACCTACCAATTGAAAATAATCGCAATAATTGCCTCTCGGTGCAGCCCCGCAACCCCGCGAAGCCAGTGTGCGTGCTAGCACGAAAGTGAACTGCATTTTGCATCGCCAAATTGCCCAAAAATTGCAATCGAATTCCGCACAGCCAAACAACAATACGCACACATACACACAGTACCCCCCGCTCTGCGTAACCGCCCTACGTTACACATTCCGTTCGCTCCCTAAGGTGGACTAAAACTAAAGTGATCTAAAACG
Seq A exon
TTGGCAGGCAAACAAACCCGGTCGGCTGTTCAAACACAAGCAGGCCTTAAAAAGAAATATCGGGGCCAGTTCGAGAAAGGGGAACAAAATGTGGTGTCGACGCAGAACAAATTAATGCAGCGCCTCG
Seq C2 exon
GTCCCAACATGACTGCAGCGCCATACAACTACAACTATATCTTTAAATACATCATCATTGGTGACATGGGCGTGGGCAAGTCCTGCCTGCTCCACCAGTTCACCGAGAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0015791-'0-4,'0-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007117=Ras=PU(14.2=63.9)
Main Inclusion Isoform:
FBpp0080200
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAATTGCCTCTCGGTGCAGC
R:
TATGGCGCTGCAGTCATGTTG
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)