DmeEX0008016 @ dm6
Exon Skipping
Gene
FBgn0026718 | fu12
Description
The gene 1-Acylglycerol-3-phosphate O-acyltransferase 2 is referred to in FlyBase by the symbol DmelAgpat2 (CG17608, FBgn0026718). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is 2L:8449691..8463994. Its molecular function is described by: 1-acylglycerol-3-phosphate O-acyltransferase activity. It is involved in the biological process described with: behavioral response to ethanol; phosphatidic acid biosynthetic process. 11 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; hyperactive; chemical resistant; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed during early pupal stages.
Coordinates
chr2L:8450794-8463994:-
Coord C1 exon
chr2L:8463627-8463994
Coord A exon
chr2L:8451454-8451901
Coord C2 exon
chr2L:8450794-8451004
Length
448 bp
Sequences
Splice sites
3' ss Seq
CTTAACATTTATATACTTAGTAG
3' ss Score
1.62
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
TTTCAATTGCCCGCGGACTCTTGATTAAAGCGGAGGTATTTTTCGAGTGCCGGCACTCTTTCGGCGAAAGCGGATGATTGTTTAAAAATCTGTGCGTACGCGCGTATATTCCTTTAACTAATCGGGATTGATTGCTTGCGCGGTTATTGCTTAATTGCAGTGAGATTTTTGGTTCTATTGAAAGTGGCTAATGTTCGTTTAGTGGAATTTATTGCACTGCAGATGCTGCAAATTATACTAGAACACACACACACACATCGGCAAAACAACTGTTACGCCTACGCAGCAGCGGCAACAACAACAACAACAACAGCAGCAAGGGAATTAGCAGCAACAATTTTCCACCCATAGAGGGAAATAACTGTTCC
Seq A exon
TAGTTCCTCCCACTCCAGCATAACTATTTTTTATTACTTTGTGTAATCTTTTGATCAATCTGATTGAGTGCTATCGCTATAAAAAGACTACGATAGCCCAGAACAACAGTAATCTTTAGGCAAAAGTACATGCCTCCTTTGTGCGCCACTTAATCAGTATAGCCAACAGTTGATTACTATTCTGATCTCTCGAATCTATGCACTATTCGTCATGGTCTTACCAAGAACTGATTAAGAAACGTACTCGATCGTTTCGGCTTCCAACAACATGTATCAGCGAGATATCAAAGTTCACTGCCTTAATCCAAACAAAAGCAATTGGACACTTCGCTGATAAGACTTGAGCAATTCCCAGTTTAAACGGACCCACCTGTGAGGGGGCTCCTCAGTTTTAATTGTCCGATCGGCGGTATCGGACGTGTGCCGACCTTCTTAAGGTCTTTCAAAG
Seq C2 exon
AAAAAGGATCCTTTGCGGTTAAGTAGCTCCCAAAAATGGCTTGTACATGCGAAGTTATTGGACTGGCCTGCGTGGTGGCTTTAATCCTAAGCGCCACGGCCAAGGCTCCCTATCAGATGCGCATGTTCTTTATATTTTTTGGAGCTGGTCTGATAGTCTTTCTGTGCGTGCCCTTTATGATTCTGCGACCGCGAGACTATCGAAATGCGCT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0026718_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGCTTGCGCGGTTATTG
R:
ATCTGATAGGGAGCCTTGGCC
Band lengths:
358-806
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)