DmeEX6005862 @ dm6
Exon Skipping
Gene
FBgn0032083 | CG9541
Description
This gene is referred to in FlyBase by the symbol DmelCG9541 (FBgn0032083). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2L:8970520..8975428. Its molecular function is described by: nucleoside diphosphate kinase activity; ATP binding. It is involved in the biological process described with: nucleoside diphosphate phosphorylation; purine nucleotide metabolic process; nucleoside triphosphate biosynthetic process. 7 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; fertile. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of extremely low expression. Peak expression observed within 06-24 hour embryonic stages, during late pupal stages, in adult male stages.
Coordinates
chr2L:8972355-8973536:-
Coord C1 exon
chr2L:8973225-8973536
Coord A exon
chr2L:8972917-8973059
Coord C2 exon
chr2L:8972355-8972537
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATTAAATGATTTGCCCACAGACA
3' ss Score
7.04
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATGCCAGCGCGGCACAAGATACCGGCGAACCAGGCAACGATTGGAATCTTACACGGAATCGAAATGGCCAAAATGCTGGCGATTTGGAGGCCGCTGCGGCGGCAGGACGATTGGGTTCTACCAATGTCGGCGCTATCGATATGCAAAATGCTGGAAAAATCAAATTCGATCCGCCCAAAGTGCCAGTGATATTTGTTTTAGGCGGCCCCGGTAGTGGCAAGGTCACCCATTGCGATACCTTCATGCAGGAGCGACGCGGTGTAACGCACATCAATATGATGGATCTCCTCCAGCAATATGCAATGGGCAATG
Seq A exon
ACATGCAAGACTTTTCACAACTGTCGTCGAAAACAGTCACTGAGGTGCTGATGTTGGAAATGAAAATGGCTCCAGCTGCCAAAGCATACCTGATATCGGGATATCCACGCTCCATGCGCGACGTTGTCGAGTATTCTGAAAAG
Seq C2 exon
ATTCAAGTCGTGAATGGCGTGATTCTTATATCCTGGCGCCAATCGGTTCTACAAAAGCAAATCGATTATGGGGCCAAATTAGGTCATGTAGTACTCTCCTTAGCCAAAATGGAATTAGAAAATTTCTTTAAAAATGTGATGCCAGTCGCCGATTATTTCGATCAGAGCGACATGTTGTTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0032083-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(26.9=37.1)
A:
PF0040617=ADK=FE(32.4=100)
C2:
PF0040617=ADK=PD(39.3=93.4)
Main Inclusion Isoform:
FBpp0304516
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0304515
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGTCACCCATTGCGATA
R:
ATAATCGGCGACTGGCATCAC
Band lengths:
252-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)