DmeINT0004700 @ dm6
Intron Retention
Gene
FBgn0037486 | CG14605
Description
This gene is referred to in FlyBase by the symbol DmelCG14605 (FBgn0037486). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3R:7217679..7219705. Its molecular function is described by: carbohydrate:proton symporter activity. It is involved in the biological process described with: glucose import. 5 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected. Peak expression observed during late pupal stages, in adult male stages.
Coordinates
chr3R:7217679-7218397:-
Coord C1 exon
chr3R:7217985-7218397
Coord A exon
chr3R:7217927-7217984
Coord C2 exon
chr3R:7217679-7217926
Length
58 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TAAAACTCATGGCCTTGCAGATT
3' ss Score
7.82
Exon sequences
Seq C1 exon
TTAACAAGGTCTCGGGAAAAGCATTTGGACTGATCGCCGTTTTACTGCTCTCCAATCAGATGTCGGGATCCTTTGCCATCTTCAACTATTCGTCGACCATCTTCGAACAGCTCGGTAGCAGGATGGAGCCCAATCTATGTGGCATATTTCTGGGTGTTGTGCAAATTTTTGGTTTGATTAGCGCCGTTTTGCTGGTGGACCGCGTGGGTCGTCGCCTCCTTTTGATCCCATCGCTGGCCGGAATGGGTTTGGCTGAGCTGGGAGTGGGTCTGCTAAAGTCCTTTGCTTCGCAGGACTTTTTACACAACAATGGTTGGATTGCACTTACCCTAATGGGCATTGTGTCCTTCACGGCGTCAGCGGGCATAGTGGCTCTTACCTTTGTCATTATAGTTGAGCTTCTGCCCTTTAAG
Seq A exon
GTAAGCTCGGCTTCGTTTATTTGTTAAAGGATTTCACTTAAAACTCATGGCCTTGCAG
Seq C2 exon
ATTCGCGCCCCTGGCATCTCCATCAGTATGTGCGGACTCAGTTTATCCGTATTCATTGCCCTCATCACTTATCCCGTCCTGATCAACGATTATGGAGTGCATGTCACAATGTTTGTGTCGGCGAGTTTCTGTCTACTAGGTTTGGTAGTTCTGGGAATATTTTTGCCTGAGACCAGGGGCAAGAGCATTACCCAATGATGGGCTAATTTCTGATAAGTGTTAAGTAGAACCAGTACTTATAAAAATTC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0037486:FBtr0081601:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(34.1=100)
A:
NA
C2:
PF0008319=Sugar_tr=PD(15.9=97.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0081119
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0304803, FBpp0304804
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGGCATAGTGGCTCTTA
R:
ACGGGATAAGTGATGAGGGCA
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)