DmeINT0006407 @ dm6
Intron Retention
Gene
FBgn0263780 | CG17684
Description
This gene is referred to in FlyBase by the symbol DmelCG17684 (FBgn0263780). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2R:1866080..2262115. Its molecular function is described by: serine-type peptidase activity. It is involved in the biological process described with: proteolysis. 5 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; fertile.
Coordinates
chr2R:1926295-1926863:-
Coord C1 exon
chr2R:1926739-1926863
Coord A exon
chr2R:1926682-1926738
Coord C2 exon
chr2R:1926295-1926681
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TTATTTACTTTAATTAACAGAGT
3' ss Score
7.16
Exon sequences
Seq C1 exon
GTGACCAAAATTTTGTGTTGGGATACAATAAACCACAAGGTATATTTTATGGCTACGCAAGATAAAAAGCCTGGACAGCGGCACTTGTATTCAGTTCAAGATCCAATACATGATGATATAAGAAA
Seq A exon
GTAAAAAAAATTGTGGATCATGTGCTCAAATATATATTTATTTACTTTAATTAACAG
Seq C2 exon
AGTTGAACCACAGTGCATAACATGTGATTTGGGTGATGATCTTTGGAGTAGTCGATACTATTATACAAACTGCACACATTTTGAAGCCTTTATAACACCATCATTAGGTGTTGCCACTAACTATGGAATTGAGTTTTACATTTTGGAATGCCAAGGTCCAGGACTACCTGTATCTGGAGTACATATGCAGACCACTCATAGTTTAGTCAAAATTTTGTATGATACAAGGCCATTTTATACAGAAAGGCTACAAAAGCTAGCTTTACCGACCCAGCGATCTTTTGAAGTGCCATTACCGCATGGAGGTCGAGCTCAAGTTCAATTACTACTTCCACCCAGCTGGAGAGAGGAGTTACGGGATGCTGCTTTTCCAGTTATTGTTGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0263780:FBtr0300103:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(10.0=100)
A:
NA
C2:
PF0093016=DPPIV_N=PD(13.9=43.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0289380
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAGCGGCACTTGTATT
R:
AGGCTTCAAAATGTGTGCAGT
Band lengths:
144-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)