DmeINT0008755 @ dm6
Intron Retention
Gene
FBgn0267795 | CG32138
Description
The gene Formin-like is referred to in FlyBase by the symbol DmelFrl (CG32138, FBgn0267795). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (4 unique). Gene sequence location is 3L:14053215..14071583. Its molecular function is described by: actin filament binding; GTPase binding; Rho GTPase binding. It is involved in the biological process described with 6 unique terms, many of which group under: pattern specification process; organelle organization; plasma membrane bounded cell projection organization; movement of cell or subcellular component; mushroom body development. 22 alleles are reported. The phenotypes of these alleles manifest in: material anatomical entity; lobe system of mushroom body; procephalic segment; ganglion; cell projection. The phenotypic classes of alleles include: planar polarity defective; decreased cell number; viable; lethal; visible; neuroanatomy defective.
Coordinates
chr3L:14065072-14067268:+
Coord C1 exon
chr3L:14065072-14065158
Coord A exon
chr3L:14065159-14065588
Coord C2 exon
chr3L:14065589-14067268
Length
430 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
CTCTCTTTGTACACCTACAGCTT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GAAATGGTGCAGGCAAAGGATCCGCCCTCACATTACTTGAGTAAACTGCGCACATATCTGGACCCAAAGGCATCAAGGAGTCATCGG
Seq A exon
GTAGGTTCAAGTTACTAAATCTACATCATTTCTAGTTTCCTGTAGTAGTTTCTGTAGTGTGGTTTCTGGTGGTTAAAAAAAAAATAAATATAAACGACTCTTTAATAAACTATTAGGCCAAGCTAATGAAAAACTAAAGTTAATAACCCGACTTAAAATCGAAATCTGTTGTTCCAATATTAATGTGTAAATTTCATTTCTCTACTCACAACACTGACAACACACCACAATCCACTATTCCCACACTCTTGTCTTTCCTGTTTCTTCCCATGTCTCTCTCTCTATTTGTTTGTCTACCTCCTGGCACCTGCACTATCCCAAATCGAACCTCGTCCTGGTCCTCGTGCTGCTGACTCCATCAACTGCATCCTGTCTTCTGTTTCCGGCCTCCCGTCATCCTATCCTTCACTCTCTCTTTGTACACCTACAG
Seq C2 exon
CTTTATCTCTTCTACTTTCTTTGTCAGAAACGGAAAATGGTCGGCGAGTCCACGTCCACCCAGGTGCTCCGCGATCTGGAGATCTCGCTGCGCACGAACCACATCGAGTGGGTGAAGGAGTTCCTGGATGACACGAACCAGGGTCTGGACGCCCTGGTCGACTATCTCAGCTTCCGACTGCAGATGATGCGACACGAGCAGCGCCTTCAGGGTGTCTTGTGTGCCTCGGAGGAGCGTCTGAATCTCACAAACGGCGGCGATGGCGGTGAGATAGTGATGGGAAACAGTAGTTCTGTTAGTCCTGGTGGAGGTGGTGGTTTACTATCACATGGAAACAGTACGGGACATGGTCTGGCCAATGGCACACTTGACTCGAGGCAGCAGCACACAATGTCCTATGGATTCCTACGACCTACCATTGCCGATGCTCTGGATAGTCCTAGTTTGAAGCGAAGGTCACGACATATTGCCAAATTAAACATGGGTGCCGCCACGGACGACATCCATGTGTCCATTATGTGCCTGCGAGCTATCATGAACAATAAGTATGGGTTCAACATGGTTATCCAGCATCGCGAGGCCATCAACTGCATTGCCTTGAGTCTTATCCACAAATCGCTGAGGACGAAAGCCCTGGTCCTGGAGCTGCTGGCAGCCATCTGTCTGGTAAAGGGAGGACACGAAATCATTTTGGGTTCGTTCGATAATTTTAAGGATGTGTGCCAGGAGAAGCGACGCTTCCAAACGCTCATGGAGTACTTTATGAACTTCGAGGCCTTTAACATAGATTTTATGGTTGCCTGCATGCAGTTCATGAACATCGTTGTCCACTCGGTGGAGGACATGAACTACAGGGTGCACTTACAGTACGAGTTTACAGCCCTGGGCTTGGATAAGTATCTGGAGCGAATTCGATTGACAGAATCGGAGGAACTGAAGGTGCAGATATCAGCCTATTTGGACAACGTCTTTGATGTTGCTGCCTTGATGGAGGATTCCGAGACAAAAACTTCAGCCCTGGAACGAGTCCAAGAGCTTGAGGATCAACTTGAGCGAGAAATAGATCGTAACTCAGAGTTCCTCTATAAGTATGCGGAATTAGAGTCCGAGAGTCTAACGCTGAAAACGGAACGCGAGCAGCTGGCTATGATTCGGCAGAAGCTGGAGGAGGAACTTACAGTGATGCAGCGAATGTTGCAGCACAACGAGCAGGAGCTGAAGAAACGGGACACACTGCTGCACACAAAGAACATGGAGCTGCAGACGCTTTCGCGTTCCCTGCCACGATCCGCCTCCAGCGGCGATGGTTCTCTGGCGAATGGTGGCCTCATGGCTGGTTCCACATCGGGGGCAGCCTCTCTAACATTGCCACCACCTCCGCCGCCAATGCCCGCCTCGCCTACTGCAAGTTCAGCTGCTCCTCCACCACCTCCGCCGCCAGCACCACCGGCTCCACCACCACCGCCGGGCTTCAGTCCGCTGGGCAGTCCGAGCGGCAGCCTAGCCTCGACAGCGCCATCGCCGCCACATGCCCCGCCCATGCTAAGCTCCTTCCAACCGCCACCGCCTCCAGTGGCCGGCTTTATGCCCGCTCCCGATGGCGCCATGACCATCAAACGCAAGGTGCCCACTAAATACAAGTTGCCCACCTTGAACTGGATAGCACTAAAGCCTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0267795:FBtr0075775:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.351
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(18.2=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(51.3=14.1),PF063718=Drf_GBD=WD(100=13.0),PF0636711=Drf_FH3=WD(100=35.2),PF0218118=FH2=PU(5.8=3.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0075517
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0075518, FBpp0113065, FBpp0306179
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCAAAGGCATCAAGGAG
R:
AGTAAACCACCACCTCCACCA
Band lengths:
351-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)