DmeINT0009149 @ dm6
Intron Retention
Gene
FBgn0052767 | CG32767
Description
This gene is referred to in FlyBase by the symbol DmelCG32767 (FBgn0052767). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (2 unique). Gene sequence location is X:5071027..5084768. Its molecular function is described by: DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding. It is involved in the biological process described with: negative regulation of transcription by RNA polymerase II; regulation of gene expression. 12 alleles are reported. The phenotype of these alleles manifest in: trichogen cell. The phenotypic classes of alleles include: visible; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:5081486-5084768:-
Coord C1 exon
chrX:5084573-5084768
Coord A exon
chrX:5082240-5084572
Coord C2 exon
chrX:5081486-5082239
Length
2333 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTTCTACATCTCACTTACAGTTA
3' ss Score
8.77
Exon sequences
Seq C1 exon
CGCTTTAGTTATTCCATCTCTAAGCATCAGGCTTTGGTCACATTACCAACCTTTCATAAAAAATAAAAAACAAAACAAAAAGGCGATAAAACGCAATTAAAGCAACTGTAAAAAACATAACAAACTAAAACCACTGATAAACTAAACCAACTGCATTGCACACACCCCGCAAACAAACGAAAATGTGATGTTAAGT
Seq A exon
GTGAGTAAAAACCGATGGAAAAGCGAAAGGAGTGTGCGTGTCGAGCATGTGCGAGTGTGTGTGTGTGCGTGCGCGTGAAGTGCGAATAATGTGTGATGGAGAGAGGGCAAGAGAGCGGCGCCAGCTAAAAAATATAAACAATTAAATAAATATGTAAATTTATATATATGGATGTATGGCATGGAAGTAGTTATCCACTAGTTACGAAAAGAGAAAAACAAAAGAACTAGTTCTCTTTTCTTTGAGTGTGCGTGTGTGGTTGTGTGGGGGAGAGGATTCCAGCTGCCTTTGTGTGTGAATTTCATTTAGTTTTTTTTTATCTGCTATTATTTTGTTGTGCGGATATTTTTTAACCCTTGTTAGCCCTTTATTTTGCTGATGTTTGCGTTAGTGTGTGTGTGTGTGCTTTCAACCCCCAAAAACTTCACCACCCGTCGCCGCCCGGCGAAAAATCACTGAGCAATAAAACCACCCACTACCCACCAAATGAAAAGACCAAAAAAAAAACGAAGCGAATTATTTCCCACTGAAAATTTTTTTCTTCCAAGGTGATGATGTTTTCTTCCTCTTGCTCCTCATCTTTCCAGGAGCAGCACTCGAAAAAAGGGAGAAGCAAGATGGAGAAGGAGAGTGAGTGAGTGAGAGAGAGCACAATTCAGAAACTGTCGAAATAAAACGGCTTCTCCACCTCTCACGCCTTTTGTCGCCCCCCGCTGCGGGCCCCATCGCACAGTGGGACGCGCAGACTAGGTGTTCTAACAAATTTCGAATTTTCACGCTCCAGTGAACTCATAGGCACTAAATTAATGTTTTAAATGTAATATTAATGAGTTTGTTGTTTTATTATCACCTATTTCGCTCCACTGTGCAACGTATGACGCGCTAGCGTCCCCTCTTTCGCTCTCGCGCAATTCGACCATTTTCCATCCTTCTCGCTCACGCCGACTGCCTTTTGGCGTATTTCTTTTGTGCCTATGTATTTCCGCTTGTTAGGTCAGCTCTCCCCCTGCTCCCCCGCCCAACAACGTCCTCTTTTTGTGCTCCCTTTTTGGGCTCCAAGTTCTGGCAGTCCTTTTAGGAACAGTTGTGGCCGAGAGAATAGGGAATTCGTTAAGACGGCCTTCTTTTGAAAGTAGATGCTCGCTTGTAGTATGATCTTAAAATGCGTGTACTAAGCCCCTATTAAATTAATAATAATAATTAAATGTTGTTTTTCATTTCTTATTTAAAAATAATCTGTTTAAGGAAAAATTAATAGATGTTGAGTAAGATGTACCTGATAATACTATTTCATTGACCCCTGCTGTATATTTTGGTTTTGTGTTGTGAGTGAGAACGAAGTTGTGTGGGTGTTTAAAAAGGGTAAGAAAGGCAAAAAAAAAGGCGAAACGGAGTAGGACAAGAACCAAAAAGAAAAACGAAATAAAAGTAACGTTGTTTTGTGTGCGGGCCAACCGAAAACCAATTAACTTTTTGAATATTGCACGAAATTGCGCGCCATCGCCCGTTCGTTTACCAACACTGACCGCCGAATGCAACCCTGCGCAACACTAACTCACACACACGAGCGTAGTAAGACCCAGGGAGGCAAAAATTCACACACAAGCAAATATTTTTTTGTTATTATTGAACAGTGTGGAAGAACAGCGCGAAAGGGAAAAACGAGCTTGCGGATGTGAAAAGTAAAGCGGGTGTGTGGAAAACGGCAACAACAAAAGGCGAACGGGGGAAAGCCAAAGAAAAACTACTCGCGGGGGAGCAAAAATCGGCTGGGAAACACGGACGAAGAAGAAGAAGAATAGGAATCAGAGTAGGAGAGCAAGCAGCAGCAGAAGAAGAAGAAGCAGCGCAGCCGCTAATTGTCTCGTCGTTCGTTGTTGTTGCTGCCTTGCAAAAAAAAAAACGAAACCGAAAAAGAAATGGCAAAAAAATAACGCAAACAAATTCAATAAAACGAACTAAACAATTAGCAAGTTAATAAACGCAACATAAAACCAAAGGAACGAACAGCAGTGGCAAAAGAAAAAGGCAAAAGAAGAACAATCGAAAAGGTCAAAAAGTGTGAGCAAGGGAGAGGAGAGACTTCCCCAAAAAAAACCGAAAGAAAAATGGAGCAAAAGTGAAAAACCTGTGAATGTGTGTGTGTGTGAGAGATGGTGAGAGAGAGAGTGGGGGGAAAAGCTAAAATTAATTTTTTGTTTTTATTTCCAAGGCGCGCACTGGTGTGTGTGTGTGAGTGTGGGTGGAAAATCGGATTTCGTAAAACGCATTTAATTGTTAACAGCAGCAAAAACGTGTATAATTTACCTGATTTTTCTACATCTCACTTACAG
Seq C2 exon
TTAGTAATCAAATTGCACAAAATGCGAAAGAGGAGAGCAGATCAATAATAATAATAATAACAAAAAGGAAAGGAGCAAATGTAACGACTTCTGTGTGTGTGTGTGCGTGCGTGAAGCAAACAACAAAAAACAGCGCAGAAACATTTTTAACTAAAATGTGGAAAGCAAGCAAGGAAACAACAAAAGCTAAAACAACAACGACAGCCAGGAGCAGCGCAGCCAGCAGCGACGTCGACGCCAGCGTCGCCGCATGGAAAGCACAGAAAACCGCATGACAAGGAAATGGAAAATTTTTGTGCAGCCCAAAAAACCAAATGTGAACATAAAGGAAAGGCCGACAGCGAGGCGTTGAGCAAACGAAAAACAAAACAAAATACAACAAAAATACAAGAACGTGTGTGTGTGTGCGTGTGTGTGTGTTTTCCAATCGTATAATCGAAGAATAATAGTAATAATAATACGAGTCAAGGAAGAAGCGGCATTCGAAAGAGAACAGAATAAACGGAGGAAGAAACAGATGTAATAACTAAAGCAGAAGAAGAAGCCCATCAGCAAATCTATGAGAAGAAGAAGAAGGCGAAGAGGAAGCGGCAACTTGAAAAATATACAACAATTATTAATTATGGCAGCTTCGACAAACAAAATTCTGTAGAAGAGGAAACAACAGACGCCCAAAGGCAAGATTTTTAAATAGGGAGTAGTAACATAAAAGAAAACTTTGGCAGCCAAAACGACAAGAAACAAACAAAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0052767:FBtr0300994:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)