DmeINT0009357 @ dm6
Intron Retention
Gene
FBgn0053177 | CG33177
Description
This gene is referred to in FlyBase by the symbol DmelCG33177 (FBgn0053177). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is X:15081367..15082369. Its molecular function is described by: glutathione transferase activity; glutathione peroxidase activity. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. No phenotypic class data is available. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed during late pupal stages.
Coordinates
chrX:15081367-15082369:+
Coord C1 exon
chrX:15081367-15081799
Coord A exon
chrX:15081800-15081940
Coord C2 exon
chrX:15081941-15082369
Length
141 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CTGGTATATCTCCTTTTCAGTGC
3' ss Score
8.43
Exon sequences
Seq C1 exon
GAAAAACTGCTGCGGGAATACCACATAAATGGGGTTGATGGGCAGTATTTCCTTTAAATTATTAATAACGTGTAAATGAGGTCAATTGAGGGAACCATGTCACCTGTTGTGCCTCCTCGGCAAATCGGCCTTCTTGGCCACGCAATAACCTCCAGACTGTTGACGAACAAGGAACGCTCGCCATGGACAACGGACCGATGGATGCCACGCCCACTGCCGCCGCCTTCCGGCTGATTTTGCTTAGCAAATCGAATCCCGTGATGGGTTGCTACATGTTCTGGACCAGTCTGCTCGTGCTGAAGATGCTCGTTATGTCACTACTCACCGCCCGCCAGCGCATGAAAACCAAGACCTATGCCAACCCAGAGGATTTACGCCTGAGTCGGAGCACGGAGGTTCGATTCGGGGATCCCAATGTGGAACGAGTTCGTCG
Seq A exon
GTAAGTGAAAATAGTTGGACATATAAATAAAGGTACATTATAACCACATACTCTTAGCTCTCATCAAGTTCTATTTAGCAAACTAAGATTACCTAAATTTTGGATATCCGAATGTATAAAACTGGTATATCTCCTTTTCAG
Seq C2 exon
TGCTCATCGCAACGACCTAGAGAACATTTTGCCCTTTCTTCTGATGTCGCTGGCCTATGTGGCCAGCGGACCGAATCCCCTGACCGCCCGTCTGCTCATCCGGATCGGTGCAAGTGCCCGGCTGATCCACACGGTGGTCTACGCCATCATCCCGGTTCCGCAGCCAGCAAGAGCCCTGGCCTTCTTCACCACCTTCGCCATCACCTGCTTCGAGGCGGGCTACGTGCTCGTCTGCTGTATCAAGTACATTTAGACTAATGCTGACCCCACTTTGCCAACTAACTACTCACCCACTCGCATTCATAGCACCAGTGATGTCAAGGTACAGGTTTTGGGTGCTCATTTTCAGTGAAACGTATGGTTAATTTAGCAGCTTTTGTCCTATAAGTAGGAAGTATAAGTCACCTATAATTGCTATAATTGGTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0053177:FBtr0073962:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(40.9=64.3)
A:
NA
C2:
PF0112413=MAPEG=PD(58.3=90.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0073779
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGCTGATTTTGCTTAGCA
R:
GCGACATCAGAAGAAAGGGCA
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)